miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5247 5' -59.3 NC_001798.1 + 2786 0.68 0.613254
Target:  5'- -gCUCaGCaGGCGcgGGCUCCGCGGCa-- -3'
miRNA:   3'- caGAG-CGaCCGU--UCGAGGUGCCGgag -5'
5247 5' -59.3 NC_001798.1 + 3095 0.69 0.533218
Target:  5'- aUCcCGC-GGCAGGCggccaggcacUCCACGGCCa- -3'
miRNA:   3'- cAGaGCGaCCGUUCG----------AGGUGCCGGag -5'
5247 5' -59.3 NC_001798.1 + 4715 0.75 0.270363
Target:  5'- cGUC-CGC-GGCAGGCUCgucgACGGCCUCc -3'
miRNA:   3'- -CAGaGCGaCCGUUCGAGg---UGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 9692 0.66 0.743253
Target:  5'- cUCUCacgugcggGCgGGUggGCUCgACGGgCUCg -3'
miRNA:   3'- cAGAG--------CGaCCGuuCGAGgUGCCgGAG- -5'
5247 5' -59.3 NC_001798.1 + 10710 0.66 0.723818
Target:  5'- ---cCGCaGGCAuccaggGGUUCCGCGGCC-Ca -3'
miRNA:   3'- cagaGCGaCCGU------UCGAGGUGCCGGaG- -5'
5247 5' -59.3 NC_001798.1 + 23015 0.72 0.421441
Target:  5'- cGUCUCGCcgcGGCAgcuGGCcCUGCuGGCCUCg -3'
miRNA:   3'- -CAGAGCGa--CCGU---UCGaGGUG-CCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 31901 0.67 0.703079
Target:  5'- ---gCGCgGGUcggacucGGGCcCCGCGGCCUCg -3'
miRNA:   3'- cagaGCGaCCG-------UUCGaGGUGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 32735 0.68 0.613254
Target:  5'- ---gCGCUGGac--UUCCACGGCCUCc -3'
miRNA:   3'- cagaGCGACCguucGAGGUGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 35590 0.66 0.752832
Target:  5'- -gCUCgGCUGcggccGCGGGCUCCGgGGgCUCc -3'
miRNA:   3'- caGAG-CGAC-----CGUUCGAGGUgCCgGAG- -5'
5247 5' -59.3 NC_001798.1 + 51871 0.67 0.663936
Target:  5'- -gCUCGaCgacagGGCGgccgAGCUCCACGGCaguUCg -3'
miRNA:   3'- caGAGC-Ga----CCGU----UCGAGGUGCCGg--AG- -5'
5247 5' -59.3 NC_001798.1 + 53755 0.69 0.572909
Target:  5'- ----gGCUGaGCGAGCUCC-UGGCCUa -3'
miRNA:   3'- cagagCGAC-CGUUCGAGGuGCCGGAg -5'
5247 5' -59.3 NC_001798.1 + 60309 0.66 0.723818
Target:  5'- -gCUCGaacgUGGUggGUUUgGCGGUCUCg -3'
miRNA:   3'- caGAGCg---ACCGuuCGAGgUGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 60451 1.09 0.001232
Target:  5'- cGUCUCGCUGGCAAGCUCCACGGCCUCu -3'
miRNA:   3'- -CAGAGCGACCGUUCGAGGUGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 69539 0.69 0.533218
Target:  5'- -gCUCGCgcgGGCugguGGUgguuUCCACGGCaCUCu -3'
miRNA:   3'- caGAGCGa--CCGu---UCG----AGGUGCCG-GAG- -5'
5247 5' -59.3 NC_001798.1 + 76444 0.67 0.653818
Target:  5'- ----aGCUGGCGcgcAGCaUCCACGGCaUCa -3'
miRNA:   3'- cagagCGACCGU---UCG-AGGUGCCGgAG- -5'
5247 5' -59.3 NC_001798.1 + 76694 0.73 0.371083
Target:  5'- -gCUCGCUccggaGGCGcGCUCC-CGGCUUCg -3'
miRNA:   3'- caGAGCGA-----CCGUuCGAGGuGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 77189 0.67 0.694106
Target:  5'- --gUCGCgacGGCAAGUcCCGCGGCgaCg -3'
miRNA:   3'- cagAGCGa--CCGUUCGaGGUGCCGgaG- -5'
5247 5' -59.3 NC_001798.1 + 77801 0.67 0.653818
Target:  5'- ---gCGCUGGCGGGCaCgCACGGCUa- -3'
miRNA:   3'- cagaGCGACCGUUCGaG-GUGCCGGag -5'
5247 5' -59.3 NC_001798.1 + 80893 0.67 0.694106
Target:  5'- uGUCUgGC-GGCGcAGCUCC-CGcGCCUg -3'
miRNA:   3'- -CAGAgCGaCCGU-UCGAGGuGC-CGGAg -5'
5247 5' -59.3 NC_001798.1 + 81400 0.68 0.643683
Target:  5'- -cCUCGCaugugGGCcuGGaUCCACGGCCUg -3'
miRNA:   3'- caGAGCGa----CCGu-UCgAGGUGCCGGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.