miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 3' -60.4 NC_001798.1 + 54862 0.67 0.662048
Target:  5'- cGCCUggCCGgccgaaagCCacgCCCCCCcgCCCCCu -3'
miRNA:   3'- -CGGG--GGUaaa-----GGaa-GGGGGGa-GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 82207 0.67 0.662048
Target:  5'- cGCCUucuCCGgg-CCUUgCCCCCCcgaCCUCCg -3'
miRNA:   3'- -CGGG---GGUaaaGGAA-GGGGGGa--GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 81012 0.68 0.652217
Target:  5'- aGCCCCgGag-----CCCCCCggCCCCCc -3'
miRNA:   3'- -CGGGGgUaaaggaaGGGGGGa-GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 135585 0.68 0.652217
Target:  5'- cGCCCgCg---CC-UCgCCCCCUCCCUg -3'
miRNA:   3'- -CGGGgGuaaaGGaAG-GGGGGAGGGGg -5'
5250 3' -60.4 NC_001798.1 + 150060 0.68 0.652217
Target:  5'- cGCCgCCC---UCUUggCCCCCaCCCCCu -3'
miRNA:   3'- -CGG-GGGuaaAGGAagGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 151517 0.68 0.652217
Target:  5'- cGCCCCCcccucccgcUUCCgcUUCCUCCUCaCCCa -3'
miRNA:   3'- -CGGGGGua-------AAGGa-AGGGGGGAGgGGG- -5'
5250 3' -60.4 NC_001798.1 + 81822 0.68 0.649264
Target:  5'- cGCCCCgGUcgccccgucgccgcUUCCgcgcgUCCUCCCgaccagCCgCCCa -3'
miRNA:   3'- -CGGGGgUA--------------AAGGa----AGGGGGGa-----GG-GGG- -5'
5250 3' -60.4 NC_001798.1 + 153260 0.68 0.64237
Target:  5'- cGCCgCCGccgCCgccUCCUCCUCCUCCg -3'
miRNA:   3'- -CGGgGGUaaaGGaa-GGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 63953 0.68 0.641385
Target:  5'- cGCCCUCGgagagCUUggagacgUCCUCCUcgUCCCCCa -3'
miRNA:   3'- -CGGGGGUaaa--GGA-------AGGGGGG--AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 34545 0.68 0.632517
Target:  5'- cGCCCCCc-------CCCCCCggagccugggUCCCCCg -3'
miRNA:   3'- -CGGGGGuaaaggaaGGGGGG----------AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 72249 0.68 0.632517
Target:  5'- gGCCCgcgguCCAgcugCCUcCCCCCCagCCuCCCg -3'
miRNA:   3'- -CGGG-----GGUaaa-GGAaGGGGGGa-GG-GGG- -5'
5250 3' -60.4 NC_001798.1 + 137581 0.68 0.632517
Target:  5'- cGCCuCCCAUaa-CU--CCUCCUCCCCUa -3'
miRNA:   3'- -CGG-GGGUAaagGAagGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 31917 0.68 0.632517
Target:  5'- gGCCCCgCGgccucgUCC-UCgCCUCUUCCUCCg -3'
miRNA:   3'- -CGGGG-GUaa----AGGaAG-GGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 45522 0.68 0.632517
Target:  5'- cGCCCCgGgc-CCgugCCCCCCgcggaCCCUa -3'
miRNA:   3'- -CGGGGgUaaaGGaa-GGGGGGag---GGGG- -5'
5250 3' -60.4 NC_001798.1 + 86823 0.68 0.632517
Target:  5'- cGCCCCCGUcgcUCCggcUCCCggCCCgggCCCggCCg -3'
miRNA:   3'- -CGGGGGUAa--AGGa--AGGG--GGGa--GGG--GG- -5'
5250 3' -60.4 NC_001798.1 + 98669 0.68 0.632517
Target:  5'- cGCCuCCCGg--CCgcCCCCCgUCCCg- -3'
miRNA:   3'- -CGG-GGGUaaaGGaaGGGGGgAGGGgg -5'
5250 3' -60.4 NC_001798.1 + 118413 0.68 0.623648
Target:  5'- cUCCCCGUgcgugcugcugagcCCUgcccCgCCCCCUCUCCCa -3'
miRNA:   3'- cGGGGGUAaa------------GGAa---G-GGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 50146 0.68 0.622663
Target:  5'- cGCCCCCGcagaCUgUCCaCCaCCgCCCCCa -3'
miRNA:   3'- -CGGGGGUaaagGA-AGG-GG-GGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 23117 0.68 0.622663
Target:  5'- gGCCCgCucg-CCUUCUCCgCCgcggaCCCCCu -3'
miRNA:   3'- -CGGGgGuaaaGGAAGGGG-GGa----GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 151049 0.68 0.622663
Target:  5'- aCCCCCGc--CCga-CCCCCgcccgaCCCCCg -3'
miRNA:   3'- cGGGGGUaaaGGaagGGGGGa-----GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.