Results 21 - 40 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5250 | 3' | -60.4 | NC_001798.1 | + | 35203 | 0.66 | 0.720294 |
Target: 5'- gGCCCCUgcgUUCgUUgCUgCCgcgCCCCCg -3' miRNA: 3'- -CGGGGGua-AAGgAAgGGgGGa--GGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 62907 | 0.66 | 0.720294 |
Target: 5'- cGCCCCCA--UCC--CCUCCCgaugCCCgaCCu -3' miRNA: 3'- -CGGGGGUaaAGGaaGGGGGGa---GGG--GG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 67117 | 0.66 | 0.720294 |
Target: 5'- gGCCCCgAcgUCCUUCUCggcgCCgCCCCUg -3' miRNA: 3'- -CGGGGgUaaAGGAAGGGg---GGaGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 80954 | 0.66 | 0.720294 |
Target: 5'- gGCCCCCGUgccuggUCCUcguggacaUCUCCaugaCCCCg -3' miRNA: 3'- -CGGGGGUAa-----AGGA--------AGGGGggagGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 127890 | 0.66 | 0.720294 |
Target: 5'- gGCCCCgGgUUCCcauuggCCCCagagCCCCCc -3' miRNA: 3'- -CGGGGgUaAAGGaa----GGGGgga-GGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 127099 | 0.67 | 0.714554 |
Target: 5'- uGCCUCCAggagCCggaccucgagUCCCCCCggggguuugggaugCCCgCCg -3' miRNA: 3'- -CGGGGGUaaa-GGa---------AGGGGGGa-------------GGG-GG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 31948 | 0.67 | 0.710714 |
Target: 5'- cGCCgCCCcgcgCUcgCCCCUCgCCCCCc -3' miRNA: 3'- -CGG-GGGuaaaGGaaGGGGGGaGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 47400 | 0.67 | 0.706864 |
Target: 5'- gGCCCCCGUggguuacgcaggCCcUCgCUgCUCUCCCg -3' miRNA: 3'- -CGGGGGUAaa----------GGaAGgGGgGAGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 148652 | 0.67 | 0.691377 |
Target: 5'- cGCCCUCccacUCCUgCCCaCCaCCCCCa -3' miRNA: 3'- -CGGGGGuaa-AGGAaGGGgGGaGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 147358 | 0.67 | 0.691377 |
Target: 5'- uCCCgCCGcgccCCUUCCCUCUUCCUUCu -3' miRNA: 3'- cGGG-GGUaaa-GGAAGGGGGGAGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 109020 | 0.67 | 0.691377 |
Target: 5'- cGCCCCCGcggug--CUCCCCgggCCUCCg -3' miRNA: 3'- -CGGGGGUaaaggaaGGGGGGa--GGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 122453 | 0.67 | 0.691377 |
Target: 5'- cGCCCCCAccagCUgUCCCCCgCggCCCa -3' miRNA: 3'- -CGGGGGUaaa-GGaAGGGGG-GagGGGg -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 30430 | 0.67 | 0.685537 |
Target: 5'- cGCCCCCGgc-CCggCCCCCggccgagcgccagggCagCCCCa -3' miRNA: 3'- -CGGGGGUaaaGGaaGGGGG---------------GagGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 18997 | 0.67 | 0.68066 |
Target: 5'- uGCCCCUgcguGUUUUCggcUCCugcaucaagagcgCCCCggCCCCCa -3' miRNA: 3'- -CGGGGG----UAAAGGa--AGG-------------GGGGa-GGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 134509 | 0.67 | 0.671857 |
Target: 5'- aGCCCCCAgugcgcgUCCUccgCCUCgCUCgCCg -3' miRNA: 3'- -CGGGGGUaa-----AGGAa--GGGGgGAGgGGg -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 6957 | 0.67 | 0.671857 |
Target: 5'- gGCCCCUugauacgaucucGUcgaCCggggcUCCCCUCUaCCCCCa -3' miRNA: 3'- -CGGGGG------------UAaa-GGa----AGGGGGGA-GGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 128310 | 0.67 | 0.667936 |
Target: 5'- cGCCCCCccgUCCgccgccgaagccgUCgCCCC-CCgCCCg -3' miRNA: 3'- -CGGGGGuaaAGGa------------AGgGGGGaGG-GGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 54862 | 0.67 | 0.662048 |
Target: 5'- cGCCUggCCGgccgaaagCCacgCCCCCCcgCCCCCu -3' miRNA: 3'- -CGGG--GGUaaa-----GGaa-GGGGGGa-GGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 32209 | 0.67 | 0.662048 |
Target: 5'- cGCCUCCuccUCC-UCCgCCUCUUCCUCu -3' miRNA: 3'- -CGGGGGuaaAGGaAGG-GGGGAGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 123384 | 0.67 | 0.662048 |
Target: 5'- cGUCCCCAggcgacgCCaggCCCCCCgggagccgcggCCCCg -3' miRNA: 3'- -CGGGGGUaaa----GGaa-GGGGGGa----------GGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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