miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 3' -60.4 NC_001798.1 + 8458 0.78 0.169018
Target:  5'- uUCUgCAUUUCC-UCCCCCC-CCCCCa -3'
miRNA:   3'- cGGGgGUAAAGGaAGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 147878 0.78 0.173184
Target:  5'- aCCCCCGU----UUCCCCCC-CCCCCg -3'
miRNA:   3'- cGGGGGUAaaggAAGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21383 0.78 0.181793
Target:  5'- cCCCCCGg--CCcgUCCCCCCggcccgUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG------AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 89380 0.78 0.186239
Target:  5'- cGUCCCCGUUcCCgUCCCCCggccgCUCCCCUu -3'
miRNA:   3'- -CGGGGGUAAaGGaAGGGGG-----GAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 499 0.77 0.190779
Target:  5'- cGCCCCgGgggcUUCCc-CCgCCCCUCCCCCc -3'
miRNA:   3'- -CGGGGgUa---AAGGaaGG-GGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 147404 0.77 0.195417
Target:  5'- uCCUCaCAUUUCCccCCCCCC-CCCCCg -3'
miRNA:   3'- cGGGG-GUAAAGGaaGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 146939 0.77 0.195417
Target:  5'- uCCCCCuc--UCUUCCCCCUuuuuUCCCCCg -3'
miRNA:   3'- cGGGGGuaaaGGAAGGGGGG----AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 145582 0.77 0.204988
Target:  5'- cGCUUCCGgggUCUUUCCUUCCUUCCCCg -3'
miRNA:   3'- -CGGGGGUaa-AGGAAGGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 35669 0.76 0.220104
Target:  5'- cGCCUCUcUUUCCcguugcUUUCCCUCUCCCCCc -3'
miRNA:   3'- -CGGGGGuAAAGG------AAGGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 81474 0.76 0.241727
Target:  5'- gGCCCCgGcccUUCUUCCCCCC-CCCgCCa -3'
miRNA:   3'- -CGGGGgUaa-AGGAAGGGGGGaGGG-GG- -5'
5250 3' -60.4 NC_001798.1 + 11020 0.76 0.241727
Target:  5'- aCCCCCuuuauucuuUUUCCU-CCCCCCgggCCCCg -3'
miRNA:   3'- cGGGGGu--------AAAGGAaGGGGGGa--GGGGg -5'
5250 3' -60.4 NC_001798.1 + 101512 0.76 0.247403
Target:  5'- gGCUCCUAg--CCccCCCCCCUCaCCCCu -3'
miRNA:   3'- -CGGGGGUaaaGGaaGGGGGGAG-GGGG- -5'
5250 3' -60.4 NC_001798.1 + 147328 0.76 0.247403
Target:  5'- cGCCCCUuc--CCUUCUCCUCgucuUCCCCCg -3'
miRNA:   3'- -CGGGGGuaaaGGAAGGGGGG----AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 23803 0.75 0.259084
Target:  5'- aGCCguggCCCGgggCCggCCCCCCgCCCCCg -3'
miRNA:   3'- -CGG----GGGUaaaGGaaGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 82126 0.75 0.271212
Target:  5'- cGgCCUCGUUgaacUCCcUCCCCUCUCCCCg -3'
miRNA:   3'- -CgGGGGUAA----AGGaAGGGGGGAGGGGg -5'
5250 3' -60.4 NC_001798.1 + 55287 0.75 0.271212
Target:  5'- cGUCUCgGUUUCCggCCCCUUUCCCCg -3'
miRNA:   3'- -CGGGGgUAAAGGaaGGGGGGAGGGGg -5'
5250 3' -60.4 NC_001798.1 + 148622 0.75 0.271212
Target:  5'- aCCCCCc---CCcUCCUCCCUCCCCg -3'
miRNA:   3'- cGGGGGuaaaGGaAGGGGGGAGGGGg -5'
5250 3' -60.4 NC_001798.1 + 48407 0.75 0.271212
Target:  5'- gGCCCCCGcccgcucggcUUCCcgUCCCCgCCgCCCCCu -3'
miRNA:   3'- -CGGGGGUa---------AAGGa-AGGGG-GGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 33966 0.75 0.276817
Target:  5'- gGCCCCCggcccGUUUCCUUCCgCCaccacuaccaccaCC-CCCCCg -3'
miRNA:   3'- -CGGGGG-----UAAAGGAAGG-GG-------------GGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 147946 0.75 0.277446
Target:  5'- cGCCCCCAcgcgCCggUCaCCCC-CCCCCa -3'
miRNA:   3'- -CGGGGGUaaa-GGaaGG-GGGGaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.