miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 3' -60.4 NC_001798.1 + 57906 1.12 0.000783
Target:  5'- cGCCCCCAUUUCCUUCCCCCCUCCCCCc -3'
miRNA:   3'- -CGGGGGUAAAGGAAGGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 1028 0.85 0.059866
Target:  5'- uCCCCCuc-UCCccaucUCCCCCCUCCCCCg -3'
miRNA:   3'- cGGGGGuaaAGGa----AGGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 153842 0.84 0.068148
Target:  5'- gGCCUCCGgcgCCUUCCCCCCgCCCUCg -3'
miRNA:   3'- -CGGGGGUaaaGGAAGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21448 0.84 0.073635
Target:  5'- cCCCCCGg--CCcgUCCCCCCgUCCCCCg -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 145305 0.83 0.077328
Target:  5'- uCCCCCGcgUCCUccccucccccgcgUCCuCCCCUCCCCCg -3'
miRNA:   3'- cGGGGGUaaAGGA-------------AGG-GGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 148872 0.83 0.079546
Target:  5'- cGCCCCCcc-UCCUccUCCUCCCUUCCCCc -3'
miRNA:   3'- -CGGGGGuaaAGGA--AGGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 75042 0.82 0.090416
Target:  5'- gGCCCCCGUcgCCgccgaggUCCCCgCCUCCUCCc -3'
miRNA:   3'- -CGGGGGUAaaGGa------AGGGG-GGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21087 0.82 0.092754
Target:  5'- cCCCCCGg--CCcgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21171 0.82 0.092754
Target:  5'- cCCCCCGg--CCcgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21129 0.82 0.092754
Target:  5'- cCCCCCGg--CCcgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21200 0.82 0.097601
Target:  5'- cCCCCCGUccCCccgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUAaaGGa--AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21264 0.82 0.097601
Target:  5'- cCCCCCGUccCCccgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUAaaGGa--AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21232 0.82 0.097601
Target:  5'- cCCCCCGUccCCccgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUAaaGGa--AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 63057 0.8 0.122518
Target:  5'- uUCCCCAg--CCgccaCCCCCCUCCCCUg -3'
miRNA:   3'- cGGGGGUaaaGGaa--GGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 154439 0.8 0.122518
Target:  5'- aGCCCCgCGcgcccCCUUCCCcguCCCUCCCCCg -3'
miRNA:   3'- -CGGGG-GUaaa--GGAAGGG---GGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 101 0.8 0.122518
Target:  5'- aGCCCCgCGcgcccCCUUCCCcguCCCUCCCCCg -3'
miRNA:   3'- -CGGGG-GUaaa--GGAAGGG---GGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21296 0.8 0.125627
Target:  5'- cCCCCCGUccCCccgUCCCCCCggcCCCCCg -3'
miRNA:   3'- cGGGGGUAaaGGa--AGGGGGGa--GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 148550 0.8 0.135394
Target:  5'- cGCCCCCGccccaCUUUCCCCCCUCUCUa -3'
miRNA:   3'- -CGGGGGUaaa--GGAAGGGGGGAGGGGg -5'
5250 3' -60.4 NC_001798.1 + 149105 0.79 0.143707
Target:  5'- aCCCCCAcUUCCUgucuccuccccgucuUUCCCCC-CCCCCa -3'
miRNA:   3'- cGGGGGUaAAGGA---------------AGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21342 0.79 0.153236
Target:  5'- gGCCCCCcgg-CCcgUCCCCCCggcccgUCCCCCc -3'
miRNA:   3'- -CGGGGGuaaaGGa-AGGGGGG------AGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.