miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 3' -60.4 NC_001798.1 + 3 0.71 0.461028
Target:  5'- cGCCCCgcc-UCUUUUCCCCCggggagucaaCCCCCg -3'
miRNA:   3'- -CGGGGguaaAGGAAGGGGGGa---------GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 101 0.8 0.122518
Target:  5'- aGCCCCgCGcgcccCCUUCCCcguCCCUCCCCCg -3'
miRNA:   3'- -CGGGG-GUaaa--GGAAGGG---GGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 146 0.72 0.415921
Target:  5'- uCCCCCGcgggcg-CCgCCCCUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaggaaGG-GGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 201 0.73 0.361204
Target:  5'- cGCCCCCGcgcggcUUUUUUCCCgcgCCCgCCCCCg -3'
miRNA:   3'- -CGGGGGUa-----AAGGAAGGG---GGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 367 0.71 0.434679
Target:  5'- cGCCCgCAcacggUUCCccgccaCCCCCUCCCUCc -3'
miRNA:   3'- -CGGGgGUa----AAGGaag---GGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 401 0.69 0.543655
Target:  5'- cCCUCCA--UCCcgCCgagcucgcggcagCCCCUCCCCCc -3'
miRNA:   3'- cGGGGGUaaAGGaaGG-------------GGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 457 0.7 0.487279
Target:  5'- gGUCCCgCGgccgCCUcCCCCgcggccgCCUCCCCCg -3'
miRNA:   3'- -CGGGG-GUaaa-GGAaGGGG-------GGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 499 0.77 0.190779
Target:  5'- cGCCCCgGgggcUUCCc-CCgCCCCUCCCCCc -3'
miRNA:   3'- -CGGGGgUa---AAGGaaGG-GGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 568 0.74 0.331441
Target:  5'- cGCgCCCCGUg-CCUUCCCUCCcgCUCCUg -3'
miRNA:   3'- -CG-GGGGUAaaGGAAGGGGGGa-GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 1028 0.85 0.059866
Target:  5'- uCCCCCuc-UCCccaucUCCCCCCUCCCCCg -3'
miRNA:   3'- cGGGGGuaaAGGa----AGGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 1056 0.71 0.45215
Target:  5'- cGCUCCCggaaGUUUCC--CCCCCCgucacUCCCCa -3'
miRNA:   3'- -CGGGGG----UAAAGGaaGGGGGGa----GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 4140 0.69 0.56294
Target:  5'- cGCCCCCGgggCCcUCgcgggcaCCCCCgCCUCCu -3'
miRNA:   3'- -CGGGGGUaaaGGaAG-------GGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 6136 0.73 0.376768
Target:  5'- uCUgCC-UUUCCcUCCCCCCcCCCCCc -3'
miRNA:   3'- cGGgGGuAAAGGaAGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 6957 0.67 0.671857
Target:  5'- gGCCCCUugauacgaucucGUcgaCCggggcUCCCCUCUaCCCCCa -3'
miRNA:   3'- -CGGGGG------------UAaa-GGa----AGGGGGGA-GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 7035 0.73 0.376768
Target:  5'- cCCCCCAUggcaUCCggggUUUCCCCggcccaCCCCCa -3'
miRNA:   3'- cGGGGGUAa---AGGa---AGGGGGGa-----GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 7490 0.66 0.75783
Target:  5'- uGCCuagCCCGguccCCUacgCCCCCCUCggcagcccggaCCCCu -3'
miRNA:   3'- -CGG---GGGUaaa-GGAa--GGGGGGAG-----------GGGG- -5'
5250 3' -60.4 NC_001798.1 + 8458 0.78 0.169018
Target:  5'- uUCUgCAUUUCC-UCCCCCC-CCCCCa -3'
miRNA:   3'- cGGGgGUAAAGGaAGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 11020 0.76 0.241727
Target:  5'- aCCCCCuuuauucuuUUUCCU-CCCCCCgggCCCCg -3'
miRNA:   3'- cGGGGGu--------AAAGGAaGGGGGGa--GGGGg -5'
5250 3' -60.4 NC_001798.1 + 13971 0.68 0.612816
Target:  5'- uCCCCC----CC--CCCCCC-CCCCCa -3'
miRNA:   3'- cGGGGGuaaaGGaaGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 14596 0.69 0.563909
Target:  5'- uGUCaCCCAcugauaccUCCcaCCCCCCgCCCCCa -3'
miRNA:   3'- -CGG-GGGUaa------AGGaaGGGGGGaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.