miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 3' -60.4 NC_001798.1 + 14720 0.74 0.31725
Target:  5'- cGUCCUucauCGUUUCUcgCCCCCCaCCCCCa -3'
miRNA:   3'- -CGGGG----GUAAAGGaaGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 18486 0.72 0.392778
Target:  5'- cCCCCCA----CUaCCCCCCgCCCCCu -3'
miRNA:   3'- cGGGGGUaaagGAaGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 18997 0.67 0.68066
Target:  5'- uGCCCCUgcguGUUUUCggcUCCugcaucaagagcgCCCCggCCCCCa -3'
miRNA:   3'- -CGGGGG----UAAAGGa--AGG-------------GGGGa-GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21087 0.82 0.092754
Target:  5'- cCCCCCGg--CCcgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21129 0.82 0.092754
Target:  5'- cCCCCCGg--CCcgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21171 0.82 0.092754
Target:  5'- cCCCCCGg--CCcgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21200 0.82 0.097601
Target:  5'- cCCCCCGUccCCccgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUAaaGGa--AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21232 0.82 0.097601
Target:  5'- cCCCCCGUccCCccgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUAaaGGa--AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21264 0.82 0.097601
Target:  5'- cCCCCCGUccCCccgUCCCCCCgUCCCCCc -3'
miRNA:   3'- cGGGGGUAaaGGa--AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21296 0.8 0.125627
Target:  5'- cCCCCCGUccCCccgUCCCCCCggcCCCCCg -3'
miRNA:   3'- cGGGGGUAaaGGa--AGGGGGGa--GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21342 0.79 0.153236
Target:  5'- gGCCCCCcgg-CCcgUCCCCCCggcccgUCCCCCc -3'
miRNA:   3'- -CGGGGGuaaaGGa-AGGGGGG------AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21383 0.78 0.181793
Target:  5'- cCCCCCGg--CCcgUCCCCCCggcccgUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG------AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21422 0.72 0.417606
Target:  5'- cCCCCCGg--CCcgUCCCCCCggCCCg -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGGagGGGg -5'
5250 3' -60.4 NC_001798.1 + 21448 0.84 0.073635
Target:  5'- cCCCCCGg--CCcgUCCCCCCgUCCCCCg -3'
miRNA:   3'- cGGGGGUaaaGGa-AGGGGGG-AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 21480 0.66 0.729804
Target:  5'- cCCCCCGg--CCggCCCCCCgggUCaCCg -3'
miRNA:   3'- cGGGGGUaaaGGaaGGGGGGa--GGgGG- -5'
5250 3' -60.4 NC_001798.1 + 21793 0.66 0.729804
Target:  5'- cGCCCCCcg-UCCgggCCCgCCUCggggcggagCCCg -3'
miRNA:   3'- -CGGGGGuaaAGGaa-GGGgGGAG---------GGGg -5'
5250 3' -60.4 NC_001798.1 + 22435 0.72 0.391967
Target:  5'- uCCUCCGcgUCCUccuccuuUCCCCCCgCCCCg -3'
miRNA:   3'- cGGGGGUaaAGGA-------AGGGGGGaGGGGg -5'
5250 3' -60.4 NC_001798.1 + 23117 0.68 0.622663
Target:  5'- gGCCCgCucg-CCUUCUCCgCCgcggaCCCCCu -3'
miRNA:   3'- -CGGGgGuaaaGGAAGGGG-GGa----GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 23417 0.71 0.469997
Target:  5'- cGCCUCC---UCCUcCgCCUCCUCCUCCu -3'
miRNA:   3'- -CGGGGGuaaAGGAaG-GGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 23803 0.75 0.259084
Target:  5'- aGCCguggCCCGgggCCggCCCCCCgCCCCCg -3'
miRNA:   3'- -CGG----GGGUaaaGGaaGGGGGGaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.