miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 3' -60.4 NC_001798.1 + 147066 0.66 0.75783
Target:  5'- gGCCCCCGca-CCUcggcggCCgCCC-CCUCCg -3'
miRNA:   3'- -CGGGGGUaaaGGAa-----GGgGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 27725 0.66 0.75783
Target:  5'- aGUCCCCG--UCCUgccgCCgCCCCUUaagagggCCCg -3'
miRNA:   3'- -CGGGGGUaaAGGAa---GG-GGGGAGg------GGG- -5'
5250 3' -60.4 NC_001798.1 + 91341 0.66 0.754142
Target:  5'- aGCCgCCGg---CUUCCCCCCgggggaagccgggCCgCCCg -3'
miRNA:   3'- -CGGgGGUaaagGAAGGGGGGa------------GG-GGG- -5'
5250 3' -60.4 NC_001798.1 + 50423 0.66 0.74858
Target:  5'- cGCCCCCcccccaCCaccgCCCCgCCUCaCCuCCg -3'
miRNA:   3'- -CGGGGGuaaa--GGaa--GGGG-GGAG-GG-GG- -5'
5250 3' -60.4 NC_001798.1 + 126392 0.66 0.74858
Target:  5'- aGCCgCUCGUcucgucgCCgcucgUCCCCCgaggCCCCCg -3'
miRNA:   3'- -CGG-GGGUAaa-----GGaa---GGGGGGa---GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 134509 0.67 0.671857
Target:  5'- aGCCCCCAgugcgcgUCCUccgCCUCgCUCgCCg -3'
miRNA:   3'- -CGGGGGUaa-----AGGAa--GGGGgGAGgGGg -5'
5250 3' -60.4 NC_001798.1 + 6957 0.67 0.671857
Target:  5'- gGCCCCUugauacgaucucGUcgaCCggggcUCCCCUCUaCCCCCa -3'
miRNA:   3'- -CGGGGG------------UAaa-GGa----AGGGGGGA-GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 128310 0.67 0.667936
Target:  5'- cGCCCCCccgUCCgccgccgaagccgUCgCCCC-CCgCCCg -3'
miRNA:   3'- -CGGGGGuaaAGGa------------AGgGGGGaGG-GGG- -5'
5250 3' -60.4 NC_001798.1 + 82207 0.67 0.662048
Target:  5'- cGCCUucuCCGgg-CCUUgCCCCCCcgaCCUCCg -3'
miRNA:   3'- -CGGG---GGUaaaGGAA-GGGGGGa--GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 54862 0.67 0.662048
Target:  5'- cGCCUggCCGgccgaaagCCacgCCCCCCcgCCCCCu -3'
miRNA:   3'- -CGGG--GGUaaa-----GGaa-GGGGGGa-GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 32209 0.67 0.662048
Target:  5'- cGCCUCCuccUCC-UCCgCCUCUUCCUCu -3'
miRNA:   3'- -CGGGGGuaaAGGaAGG-GGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 18997 0.67 0.68066
Target:  5'- uGCCCCUgcguGUUUUCggcUCCugcaucaagagcgCCCCggCCCCCa -3'
miRNA:   3'- -CGGGGG----UAAAGGa--AGG-------------GGGGa-GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 30430 0.67 0.685537
Target:  5'- cGCCCCCGgc-CCggCCCCCggccgagcgccagggCagCCCCa -3'
miRNA:   3'- -CGGGGGUaaaGGaaGGGGG---------------GagGGGG- -5'
5250 3' -60.4 NC_001798.1 + 122453 0.67 0.691377
Target:  5'- cGCCCCCAccagCUgUCCCCCgCggCCCa -3'
miRNA:   3'- -CGGGGGUaaa-GGaAGGGGG-GagGGGg -5'
5250 3' -60.4 NC_001798.1 + 109020 0.67 0.691377
Target:  5'- cGCCCCCGcggug--CUCCCCgggCCUCCg -3'
miRNA:   3'- -CGGGGGUaaaggaaGGGGGGa--GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 147358 0.67 0.691377
Target:  5'- uCCCgCCGcgccCCUUCCCUCUUCCUUCu -3'
miRNA:   3'- cGGG-GGUaaa-GGAAGGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 148652 0.67 0.691377
Target:  5'- cGCCCUCccacUCCUgCCCaCCaCCCCCa -3'
miRNA:   3'- -CGGGGGuaa-AGGAaGGGgGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 47400 0.67 0.706864
Target:  5'- gGCCCCCGUggguuacgcaggCCcUCgCUgCUCUCCCg -3'
miRNA:   3'- -CGGGGGUAaa----------GGaAGgGGgGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 31948 0.67 0.710714
Target:  5'- cGCCgCCCcgcgCUcgCCCCUCgCCCCCc -3'
miRNA:   3'- -CGG-GGGuaaaGGaaGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 123384 0.67 0.662048
Target:  5'- cGUCCCCAggcgacgCCaggCCCCCCgggagccgcggCCCCg -3'
miRNA:   3'- -CGGGGGUaaa----GGaa-GGGGGGa----------GGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.