miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 3' -60.4 NC_001798.1 + 154539 0.73 0.361204
Target:  5'- cGCCCCCGcgcggcUUUUUUCCCgcgCCCgCCCCCg -3'
miRNA:   3'- -CGGGGGUa-----AAGGAAGGG---GGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 154484 0.72 0.415921
Target:  5'- uCCCCCGcgggcg-CCgCCCCUCCCCCc -3'
miRNA:   3'- cGGGGGUaaaggaaGG-GGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 154439 0.8 0.122518
Target:  5'- aGCCCCgCGcgcccCCUUCCCcguCCCUCCCCCg -3'
miRNA:   3'- -CGGGG-GUaaa--GGAAGGG---GGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 154341 0.71 0.461028
Target:  5'- cGCCCCgcc-UCUUUUCCCCCggggagucaaCCCCCg -3'
miRNA:   3'- -CGGGGguaaAGGAAGGGGGGa---------GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 153842 0.84 0.068148
Target:  5'- gGCCUCCGgcgCCUUCCCCCCgCCCUCg -3'
miRNA:   3'- -CGGGGGUaaaGGAAGGGGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 153260 0.68 0.64237
Target:  5'- cGCCgCCGccgCCgccUCCUCCUCCUCCg -3'
miRNA:   3'- -CGGgGGUaaaGGaa-GGGGGGAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 152612 0.73 0.364281
Target:  5'- cGCCCCCcg--CCgacgcagaugggagUCCCCCCggcgCCCCg -3'
miRNA:   3'- -CGGGGGuaaaGGa-------------AGGGGGGa---GGGGg -5'
5250 3' -60.4 NC_001798.1 + 152351 0.66 0.766977
Target:  5'- aGUCUCUGUcucUCCgggUCuCCUCCUCCCgCCg -3'
miRNA:   3'- -CGGGGGUAa--AGGa--AG-GGGGGAGGG-GG- -5'
5250 3' -60.4 NC_001798.1 + 152124 0.69 0.573626
Target:  5'- cGCCCCCGag-CCcaCCgCCCgcgaccaCCCCCa -3'
miRNA:   3'- -CGGGGGUaaaGGaaGGgGGGa------GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 152006 0.71 0.461028
Target:  5'- cGCUCUCGggcUCCUcccugCCUCCCUCgCCCCc -3'
miRNA:   3'- -CGGGGGUaa-AGGAa----GGGGGGAG-GGGG- -5'
5250 3' -60.4 NC_001798.1 + 151982 0.74 0.303521
Target:  5'- cCCCUCGUcUCCc-CCCCUgUCCCCCg -3'
miRNA:   3'- cGGGGGUAaAGGaaGGGGGgAGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 151874 0.74 0.303521
Target:  5'- uCCCCCGUgUCCcUCCcucaCCCCggcCCCCCg -3'
miRNA:   3'- cGGGGGUAaAGGaAGG----GGGGa--GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 151517 0.68 0.652217
Target:  5'- cGCCCCCcccucccgcUUCCgcUUCCUCCUCaCCCa -3'
miRNA:   3'- -CGGGGGua-------AAGGa-AGGGGGGAGgGGG- -5'
5250 3' -60.4 NC_001798.1 + 151093 0.73 0.353592
Target:  5'- aCCCCCg---CCcgCCCCCCgcccgaCCCCCg -3'
miRNA:   3'- cGGGGGuaaaGGaaGGGGGGa-----GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 151049 0.68 0.622663
Target:  5'- aCCCCCGc--CCga-CCCCCgcccgaCCCCCg -3'
miRNA:   3'- cGGGGGUaaaGGaagGGGGGa-----GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 151016 0.68 0.622663
Target:  5'- aCCCCCGc--CCga-CCCCCgcccgaCCCCCg -3'
miRNA:   3'- cGGGGGUaaaGGaagGGGGGa-----GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 150975 0.72 0.392778
Target:  5'- aGCCCCCGguuagugCCcgaCCCCCgcccgaCCCCCg -3'
miRNA:   3'- -CGGGGGUaaa----GGaagGGGGGa-----GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 150775 0.71 0.434679
Target:  5'- cGCCCCCAgacCCagaUCCCaCCC-CCgCCCg -3'
miRNA:   3'- -CGGGGGUaaaGGa--AGGG-GGGaGG-GGG- -5'
5250 3' -60.4 NC_001798.1 + 150235 0.69 0.58338
Target:  5'- -aCCCCGggUCC-UCCCUCCgCgCCCg -3'
miRNA:   3'- cgGGGGUaaAGGaAGGGGGGaGgGGG- -5'
5250 3' -60.4 NC_001798.1 + 150060 0.68 0.652217
Target:  5'- cGCCgCCC---UCUUggCCCCCaCCCCCu -3'
miRNA:   3'- -CGG-GGGuaaAGGAagGGGGGaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.