miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 5' -51.5 NC_001798.1 + 8560 0.68 0.96808
Target:  5'- cGAGgGGUgGGGGCGAAGaaggCGcCAUACa -3'
miRNA:   3'- cCUCgCCA-UCCCGCUUUa---GUaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 46681 0.68 0.96808
Target:  5'- cGGGGcCGGauaccgcgGGGGCGuGAAUaAUCGCGCa -3'
miRNA:   3'- -CCUC-GCCa-------UCCCGC-UUUAgUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 93612 0.68 0.96808
Target:  5'- uGGAGCGcugcgacGGCGGAGUCAUCgucggGCGCc -3'
miRNA:   3'- -CCUCGCcauc---CCGCUUUAGUAG-----UGUG- -5'
5250 5' -51.5 NC_001798.1 + 150420 0.68 0.964818
Target:  5'- gGGGGCGGcggcggcgcGGGGCGGAcUCcggaCGCGCg -3'
miRNA:   3'- -CCUCGCCa--------UCCCGCUUuAGua--GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 97606 0.68 0.964818
Target:  5'- aGGGGcCGGagagcUGGGGCGAcAUCGcgACGCg -3'
miRNA:   3'- -CCUC-GCC-----AUCCCGCUuUAGUagUGUG- -5'
5250 5' -51.5 NC_001798.1 + 124509 0.68 0.964818
Target:  5'- gGGGGgGGgcugcGGGCGu-GUCGUCcCACa -3'
miRNA:   3'- -CCUCgCCau---CCCGCuuUAGUAGuGUG- -5'
5250 5' -51.5 NC_001798.1 + 95686 0.68 0.96133
Target:  5'- cGGcGGCGGcgGGGGCGGccggCGUCGCcCg -3'
miRNA:   3'- -CC-UCGCCa-UCCCGCUuua-GUAGUGuG- -5'
5250 5' -51.5 NC_001798.1 + 57402 0.68 0.96133
Target:  5'- gGGccAGCGGgucGuGGCGGuugCAUCGCACg -3'
miRNA:   3'- -CC--UCGCCau-C-CCGCUuuaGUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 146079 0.68 0.95761
Target:  5'- gGGAGgGGUccGGGGCGAGG-CGggCGgGCg -3'
miRNA:   3'- -CCUCgCCA--UCCCGCUUUaGUa-GUgUG- -5'
5250 5' -51.5 NC_001798.1 + 96710 0.68 0.95761
Target:  5'- uGGcGGCGGUGGGGuCGGGccUCAUCGUGCc -3'
miRNA:   3'- -CC-UCGCCAUCCC-GCUUu-AGUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 88059 0.68 0.95761
Target:  5'- gGGGGCGGgcucguccccUGGGGCGGcggCGUCuagcuCGCg -3'
miRNA:   3'- -CCUCGCC----------AUCCCGCUuuaGUAGu----GUG- -5'
5250 5' -51.5 NC_001798.1 + 85286 0.68 0.95761
Target:  5'- cGGGGgGGcgGGGGCcGggGUCcgCcCGCg -3'
miRNA:   3'- -CCUCgCCa-UCCCG-CuuUAGuaGuGUG- -5'
5250 5' -51.5 NC_001798.1 + 16951 0.68 0.95761
Target:  5'- gGGAGCGGggucacuuGGGUGAAAUagcggCAgGCg -3'
miRNA:   3'- -CCUCGCCau------CCCGCUUUAgua--GUgUG- -5'
5250 5' -51.5 NC_001798.1 + 12712 0.68 0.95761
Target:  5'- gGGGGCGGcgGGGGCGugGUgCggCGCGa -3'
miRNA:   3'- -CCUCGCCa-UCCCGCuuUA-GuaGUGUg -5'
5250 5' -51.5 NC_001798.1 + 40451 0.69 0.953651
Target:  5'- cGGAagcacGCGGUAGGGUGggGUguaugcggaaGUCGgACg -3'
miRNA:   3'- -CCU-----CGCCAUCCCGCuuUAg---------UAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 153081 0.69 0.95116
Target:  5'- cGGAGCGGcGGGGCGGcgccgggcccucgcgGAUauaUACGCg -3'
miRNA:   3'- -CCUCGCCaUCCCGCU---------------UUAguaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 153762 0.69 0.949451
Target:  5'- uGGGGCGGaagGGGGCGcug-CGgccCGCGCu -3'
miRNA:   3'- -CCUCGCCa--UCCCGCuuuaGUa--GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 151477 0.69 0.949451
Target:  5'- aGGGGCG---GGGCGAucUCGUCcguGCACa -3'
miRNA:   3'- -CCUCGCcauCCCGCUuuAGUAG---UGUG- -5'
5250 5' -51.5 NC_001798.1 + 125682 0.69 0.945005
Target:  5'- aGGGgGGUcGGGGCGAAggaguccgacGUCGggCGCGCg -3'
miRNA:   3'- cCUCgCCA-UCCCGCUU----------UAGUa-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 103183 0.69 0.94031
Target:  5'- gGGuGCGGUcGGGCGGAAccUCGUCc--- -3'
miRNA:   3'- -CCuCGCCAuCCCGCUUU--AGUAGugug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.