Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5250 | 5' | -51.5 | NC_001798.1 | + | 36591 | 0.66 | 0.986856 |
Target: 5'- -cGGCGGccGGGCGggGg---CGCGCg -3' miRNA: 3'- ccUCGCCauCCCGCuuUaguaGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 36612 | 0.66 | 0.986856 |
Target: 5'- -cGGCGGccGGGCGggGg---CGCGCg -3' miRNA: 3'- ccUCGCCauCCCGCuuUaguaGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 36101 | 0.66 | 0.986856 |
Target: 5'- cGGGUGGUGGGGgGggGcccggcugCGUCuCGCc -3' miRNA: 3'- cCUCGCCAUCCCgCuuUa-------GUAGuGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 69490 | 0.66 | 0.986856 |
Target: 5'- cGAGCGau-GGGCGGGcgCAggACGCg -3' miRNA: 3'- cCUCGCcauCCCGCUUuaGUagUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 84745 | 0.66 | 0.985145 |
Target: 5'- uGGGGCGGcGGGGCc--GUCGg-GCGCu -3' miRNA: 3'- -CCUCGCCaUCCCGcuuUAGUagUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 135250 | 0.66 | 0.985145 |
Target: 5'- gGGGGCGGgcGGGCcugGAAAggcuggaCGCGCu -3' miRNA: 3'- -CCUCGCCauCCCG---CUUUagua---GUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 15357 | 0.67 | 0.98327 |
Target: 5'- -aGGCGGUgAGGGgGGAAUCGgccguggGCGCg -3' miRNA: 3'- ccUCGCCA-UCCCgCUUUAGUag-----UGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 8304 | 0.67 | 0.98327 |
Target: 5'- gGGGGgGGgGGGGCGAGAg-GUCAa-- -3' miRNA: 3'- -CCUCgCCaUCCCGCUUUagUAGUgug -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 3319 | 0.67 | 0.98327 |
Target: 5'- cGGGGCGGcggcGGcGGCGGGcuucccgcgggcGUCGUCGC-Cg -3' miRNA: 3'- -CCUCGCCa---UC-CCGCUU------------UAGUAGUGuG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 64505 | 0.67 | 0.981221 |
Target: 5'- cGGAGgGGguGGGCGggGUC--CAgGCa -3' miRNA: 3'- -CCUCgCCauCCCGCuuUAGuaGUgUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 148414 | 0.67 | 0.981221 |
Target: 5'- cGGGGUGGgcgccGGGGCGggGgugg-GCACg -3' miRNA: 3'- -CCUCGCCa----UCCCGCuuUaguagUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 104723 | 0.67 | 0.981221 |
Target: 5'- cGGuAGCGGUAcugcGGGCGuccgcucUCGUCGC-Cg -3' miRNA: 3'- -CC-UCGCCAU----CCCGCuuu----AGUAGUGuG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 74295 | 0.67 | 0.97756 |
Target: 5'- aGGuGCGGgcGGGCGAcguguacccguaccuGAcgUAUUACGCc -3' miRNA: 3'- -CCuCGCCauCCCGCU---------------UUa-GUAGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 154416 | 0.67 | 0.976568 |
Target: 5'- cGGcGGCGGgcGGGCGgcAgggCAgcccCGCGCg -3' miRNA: 3'- -CC-UCGCCauCCCGCuuUa--GUa---GUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 30954 | 0.67 | 0.976568 |
Target: 5'- gGGGGCGGgcgggggucGGGCGggG--GUCGgGCg -3' miRNA: 3'- -CCUCGCCau-------CCCGCuuUagUAGUgUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 78 | 0.67 | 0.976568 |
Target: 5'- cGGcGGCGGgcGGGCGgcAgggCAgcccCGCGCg -3' miRNA: 3'- -CC-UCGCCauCCCGCuuUa--GUa---GUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 22340 | 0.67 | 0.973947 |
Target: 5'- cGGAcgcGCGGgcgucGGGGCGggG-CcgCGCAUa -3' miRNA: 3'- -CCU---CGCCa----UCCCGCuuUaGuaGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 63268 | 0.68 | 0.97112 |
Target: 5'- gGGGGCGG--GGGCGGAAUaCAggggcugCAUAUg -3' miRNA: 3'- -CCUCGCCauCCCGCUUUA-GUa------GUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 46681 | 0.68 | 0.96808 |
Target: 5'- cGGGGcCGGauaccgcgGGGGCGuGAAUaAUCGCGCa -3' miRNA: 3'- -CCUC-GCCa-------UCCCGC-UUUAgUAGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 8560 | 0.68 | 0.96808 |
Target: 5'- cGAGgGGUgGGGGCGAAGaaggCGcCAUACa -3' miRNA: 3'- cCUCgCCA-UCCCGCUUUa---GUaGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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