miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 5' -51.5 NC_001798.1 + 36506 0.71 0.900383
Target:  5'- cGGGCGGccGGGCGggGg---CGCGCg -3'
miRNA:   3'- cCUCGCCauCCCGCuuUaguaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 132359 0.71 0.900383
Target:  5'- uGGGGcCGGUAccGGGUGG--UCAUCuACACa -3'
miRNA:   3'- -CCUC-GCCAU--CCCGCUuuAGUAG-UGUG- -5'
5250 5' -51.5 NC_001798.1 + 11179 0.7 0.904287
Target:  5'- gGGGGCGGUGGGGCGGGccugccgaACGg -3'
miRNA:   3'- -CCUCGCCAUCCCGCUUuaguag--UGUg -5'
5250 5' -51.5 NC_001798.1 + 81992 0.7 0.906841
Target:  5'- aGGAGCGGUcguccccgGGGGCGAccgCcgC-CGCg -3'
miRNA:   3'- -CCUCGCCA--------UCCCGCUuuaGuaGuGUG- -5'
5250 5' -51.5 NC_001798.1 + 17669 0.7 0.906841
Target:  5'- aGGAGgGGUAGGaucGCGggGUgGuUCAgGCg -3'
miRNA:   3'- -CCUCgCCAUCC---CGCuuUAgU-AGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26957 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26808 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26868 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 27017 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26838 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26987 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26898 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 16233 0.7 0.924714
Target:  5'- gGGGGCGGUGGGGcCGggGcccUCccCGCcCa -3'
miRNA:   3'- -CCUCGCCAUCCC-GCuuU---AGuaGUGuG- -5'
5250 5' -51.5 NC_001798.1 + 96033 0.7 0.924714
Target:  5'- cGGGGCGGgcGGGCGGg--CGaCGgGCa -3'
miRNA:   3'- -CCUCGCCauCCCGCUuuaGUaGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 1252 0.69 0.935365
Target:  5'- gGGGGCGGgcccGCGuccgcGUCGUCGCGCa -3'
miRNA:   3'- -CCUCGCCauccCGCuu---UAGUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 32242 0.69 0.935365
Target:  5'- cGGGGCuGGUGGGaGCGucg-CGUC-CGCg -3'
miRNA:   3'- -CCUCG-CCAUCC-CGCuuuaGUAGuGUG- -5'
5250 5' -51.5 NC_001798.1 + 103183 0.69 0.94031
Target:  5'- gGGuGCGGUcGGGCGGAAccUCGUCc--- -3'
miRNA:   3'- -CCuCGCCAuCCCGCUUU--AGUAGugug -5'
5250 5' -51.5 NC_001798.1 + 125682 0.69 0.945005
Target:  5'- aGGGgGGUcGGGGCGAAggaguccgacGUCGggCGCGCg -3'
miRNA:   3'- cCUCgCCA-UCCCGCUU----------UAGUa-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 151477 0.69 0.949451
Target:  5'- aGGGGCG---GGGCGAucUCGUCcguGCACa -3'
miRNA:   3'- -CCUCGCcauCCCGCUuuAGUAG---UGUG- -5'
5250 5' -51.5 NC_001798.1 + 153762 0.69 0.949451
Target:  5'- uGGGGCGGaagGGGGCGcug-CGgccCGCGCu -3'
miRNA:   3'- -CCUCGCCa--UCCCGCuuuaGUa--GUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.