miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 5' -51.5 NC_001798.1 + 57940 1.14 0.00398
Target:  5'- cGGAGCGGUAGGGCGAAAUCAUCACACg -3'
miRNA:   3'- -CCUCGCCAUCCCGCUUUAGUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 36423 0.92 0.08899
Target:  5'- cGGGGCGGUGGGGCGggGUCgggGUCGCGg -3'
miRNA:   3'- -CCUCGCCAUCCCGCuuUAG---UAGUGUg -5'
5250 5' -51.5 NC_001798.1 + 153007 0.82 0.338628
Target:  5'- cGGGGCGGUcgccGGGGCGGAGUCcgggccCGCGCg -3'
miRNA:   3'- -CCUCGCCA----UCCCGCUUUAGua----GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 2564 0.77 0.57095
Target:  5'- aGGGGCGGccgcGGGGCGggGggCGUcCGCGCg -3'
miRNA:   3'- -CCUCGCCa---UCCCGCuuUa-GUA-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 33501 0.76 0.644451
Target:  5'- uGGGGCGGgggcgAGGGCGGuugAAUCAcaACGCa -3'
miRNA:   3'- -CCUCGCCa----UCCCGCU---UUAGUagUGUG- -5'
5250 5' -51.5 NC_001798.1 + 26928 0.76 0.654978
Target:  5'- gGGGGuCGGgcGGGCGggGUCGggCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUAGUa-GUgUG- -5'
5250 5' -51.5 NC_001798.1 + 154187 0.75 0.707133
Target:  5'- cGGAGCGcGUcGGGGCGGGAgaguucacUCggCACGCa -3'
miRNA:   3'- -CCUCGC-CA-UCCCGCUUU--------AGuaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 97528 0.74 0.767382
Target:  5'- cGGAGgaGGgGGGGCGGAggCGUgGCGCg -3'
miRNA:   3'- -CCUCg-CCaUCCCGCUUuaGUAgUGUG- -5'
5250 5' -51.5 NC_001798.1 + 15445 0.73 0.79592
Target:  5'- cGGAGUcGUGGGGCGggGg-GUCGCGu -3'
miRNA:   3'- -CCUCGcCAUCCCGCuuUagUAGUGUg -5'
5250 5' -51.5 NC_001798.1 + 37548 0.73 0.805132
Target:  5'- aGGGUGGUGuGGCGGGacguGUCGUCAUGCg -3'
miRNA:   3'- cCUCGCCAUcCCGCUU----UAGUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 48634 0.73 0.814178
Target:  5'- aGGGGCGGgaGGGGCGGGAggaAggACACg -3'
miRNA:   3'- -CCUCGCCa-UCCCGCUUUag-UagUGUG- -5'
5250 5' -51.5 NC_001798.1 + 121402 0.73 0.823048
Target:  5'- cGGAuGCGGUgGGGGCGAuccuagcccccGUCAUCccgGCGCa -3'
miRNA:   3'- -CCU-CGCCA-UCCCGCUu----------UAGUAG---UGUG- -5'
5250 5' -51.5 NC_001798.1 + 85829 0.72 0.831734
Target:  5'- gGGGGCGGgggcGGGCGggGgcUCGggaACGCa -3'
miRNA:   3'- -CCUCGCCau--CCCGCuuU--AGUag-UGUG- -5'
5250 5' -51.5 NC_001798.1 + 10615 0.72 0.831734
Target:  5'- cGAGCGGUuccGGGGCGcg--CAUgCACGCc -3'
miRNA:   3'- cCUCGCCA---UCCCGCuuuaGUA-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 97250 0.72 0.831734
Target:  5'- cGGGCGGc-GGGCGGAGcacuUCgAUCGCGCg -3'
miRNA:   3'- cCUCGCCauCCCGCUUU----AG-UAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 48695 0.72 0.856606
Target:  5'- cGGAGCGGUGGGGaa-----GUCACGa -3'
miRNA:   3'- -CCUCGCCAUCCCgcuuuagUAGUGUg -5'
5250 5' -51.5 NC_001798.1 + 125203 0.72 0.864476
Target:  5'- cGGAGCGGUgcAGGGCcuGAAAcguguUCAggACGCu -3'
miRNA:   3'- -CCUCGCCA--UCCCG--CUUU-----AGUagUGUG- -5'
5250 5' -51.5 NC_001798.1 + 15041 0.71 0.879544
Target:  5'- gGGAGC-GUGGGGCGGAugggccCGgggCGCGCg -3'
miRNA:   3'- -CCUCGcCAUCCCGCUUua----GUa--GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 83576 0.71 0.88673
Target:  5'- uGGGGCGGUgaaacugcGGGGCGGccAUCgggaccuuggGUCGCGCc -3'
miRNA:   3'- -CCUCGCCA--------UCCCGCUu-UAG----------UAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 68301 0.71 0.88673
Target:  5'- cGGuGCGGUgcagacagcgGGGGCu--GUCGUCugGCa -3'
miRNA:   3'- -CCuCGCCA----------UCCCGcuuUAGUAGugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.