miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 5' -51.5 NC_001798.1 + 78 0.67 0.976568
Target:  5'- cGGcGGCGGgcGGGCGgcAgggCAgcccCGCGCg -3'
miRNA:   3'- -CC-UCGCCauCCCGCuuUa--GUa---GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 1252 0.69 0.935365
Target:  5'- gGGGGCGGgcccGCGuccgcGUCGUCGCGCa -3'
miRNA:   3'- -CCUCGCCauccCGCuu---UAGUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 2564 0.77 0.57095
Target:  5'- aGGGGCGGccgcGGGGCGggGggCGUcCGCGCg -3'
miRNA:   3'- -CCUCGCCa---UCCCGCuuUa-GUA-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 3319 0.67 0.98327
Target:  5'- cGGGGCGGcggcGGcGGCGGGcuucccgcgggcGUCGUCGC-Cg -3'
miRNA:   3'- -CCUCGCCa---UC-CCGCUU------------UAGUAGUGuG- -5'
5250 5' -51.5 NC_001798.1 + 4224 0.66 0.992232
Target:  5'- gGGGGCGc--GGGCGgcGUCGUCGuCGu -3'
miRNA:   3'- -CCUCGCcauCCCGCuuUAGUAGU-GUg -5'
5250 5' -51.5 NC_001798.1 + 5912 0.66 0.99109
Target:  5'- -aGGCGGgcccggacggGGGGCGGGccguUCcUCGCGCa -3'
miRNA:   3'- ccUCGCCa---------UCCCGCUUu---AGuAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 8304 0.67 0.98327
Target:  5'- gGGGGgGGgGGGGCGAGAg-GUCAa-- -3'
miRNA:   3'- -CCUCgCCaUCCCGCUUUagUAGUgug -5'
5250 5' -51.5 NC_001798.1 + 8560 0.68 0.96808
Target:  5'- cGAGgGGUgGGGGCGAAGaaggCGcCAUACa -3'
miRNA:   3'- cCUCgCCA-UCCCGCUUUa---GUaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 9326 0.66 0.98841
Target:  5'- uGAGCGGgc-GGCGAGAU--UUACGCc -3'
miRNA:   3'- cCUCGCCaucCCGCUUUAguAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 10314 0.66 0.988991
Target:  5'- gGGGGgGGUuggGGGGgGAAcgcugaccggcgugcGUuCGUCACGCc -3'
miRNA:   3'- -CCUCgCCA---UCCCgCUU---------------UA-GUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 10615 0.72 0.831734
Target:  5'- cGAGCGGUuccGGGGCGcg--CAUgCACGCc -3'
miRNA:   3'- cCUCGCCA---UCCCGCuuuaGUA-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 11179 0.7 0.904287
Target:  5'- gGGGGCGGUGGGGCGGGccugccgaACGg -3'
miRNA:   3'- -CCUCGCCAUCCCGCUUuaguag--UGUg -5'
5250 5' -51.5 NC_001798.1 + 12712 0.68 0.95761
Target:  5'- gGGGGCGGcgGGGGCGugGUgCggCGCGa -3'
miRNA:   3'- -CCUCGCCa-UCCCGCuuUA-GuaGUGUg -5'
5250 5' -51.5 NC_001798.1 + 14365 0.66 0.989819
Target:  5'- cGGGGcCGGUGGGuGCGGccccaacagCAgCACACc -3'
miRNA:   3'- -CCUC-GCCAUCC-CGCUuua------GUaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 15041 0.71 0.879544
Target:  5'- gGGAGC-GUGGGGCGGAugggccCGgggCGCGCg -3'
miRNA:   3'- -CCUCGcCAUCCCGCUUua----GUa--GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 15269 0.66 0.99109
Target:  5'- cGGGCGGUGccccggguuccGGGCGuggcGGUgGUCGCGg -3'
miRNA:   3'- cCUCGCCAU-----------CCCGCu---UUAgUAGUGUg -5'
5250 5' -51.5 NC_001798.1 + 15357 0.67 0.98327
Target:  5'- -aGGCGGUgAGGGgGGAAUCGgccguggGCGCg -3'
miRNA:   3'- ccUCGCCA-UCCCgCUUUAGUag-----UGUG- -5'
5250 5' -51.5 NC_001798.1 + 15445 0.73 0.79592
Target:  5'- cGGAGUcGUGGGGCGggGg-GUCGCGu -3'
miRNA:   3'- -CCUCGcCAUCCCGCuuUagUAGUGUg -5'
5250 5' -51.5 NC_001798.1 + 15908 0.66 0.989819
Target:  5'- cGGGGUGGgaagGGGGCGuacgGAcCGUCAUc- -3'
miRNA:   3'- -CCUCGCCa---UCCCGCu---UUaGUAGUGug -5'
5250 5' -51.5 NC_001798.1 + 16233 0.7 0.924714
Target:  5'- gGGGGCGGUGGGGcCGggGcccUCccCGCcCa -3'
miRNA:   3'- -CCUCGCCAUCCC-GCuuU---AGuaGUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.