Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5250 | 5' | -51.5 | NC_001798.1 | + | 36570 | 0.66 | 0.986856 |
Target: 5'- -cGGCGGccGGGCGggGg---CGCGCg -3' miRNA: 3'- ccUCGCCauCCCGCuuUaguaGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 10314 | 0.66 | 0.988991 |
Target: 5'- gGGGGgGGUuggGGGGgGAAcgcugaccggcgugcGUuCGUCACGCc -3' miRNA: 3'- -CCUCgCCA---UCCCgCUU---------------UA-GUAGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 30992 | 0.66 | 0.98841 |
Target: 5'- cGGGCGGgggucGGGCGggG--GUCGgGCg -3' miRNA: 3'- cCUCGCCau---CCCGCuuUagUAGUgUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 9326 | 0.66 | 0.98841 |
Target: 5'- uGAGCGGgc-GGCGAGAU--UUACGCc -3' miRNA: 3'- cCUCGCCaucCCGCUUUAguAGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 91128 | 0.66 | 0.988112 |
Target: 5'- gGGGGCGuccucGUccagcgaacgcGGGGCGAuaaaucgaaauUCGUCGCACu -3' miRNA: 3'- -CCUCGC-----CA-----------UCCCGCUuu---------AGUAGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 69490 | 0.66 | 0.986856 |
Target: 5'- cGAGCGau-GGGCGGGcgCAggACGCg -3' miRNA: 3'- cCUCGCcauCCCGCUUuaGUagUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 36101 | 0.66 | 0.986856 |
Target: 5'- cGGGUGGUGGGGgGggGcccggcugCGUCuCGCc -3' miRNA: 3'- cCUCGCCAUCCCgCuuUa-------GUAGuGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 36612 | 0.66 | 0.986856 |
Target: 5'- -cGGCGGccGGGCGggGg---CGCGCg -3' miRNA: 3'- ccUCGCCauCCCGCuuUaguaGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 36591 | 0.66 | 0.986856 |
Target: 5'- -cGGCGGccGGGCGggGg---CGCGCg -3' miRNA: 3'- ccUCGCCauCCCGCuuUaguaGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 15908 | 0.66 | 0.989819 |
Target: 5'- cGGGGUGGgaagGGGGCGuacgGAcCGUCAUc- -3' miRNA: 3'- -CCUCGCCa---UCCCGCu---UUaGUAGUGug -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 14365 | 0.66 | 0.989819 |
Target: 5'- cGGGGcCGGUGGGuGCGGccccaacagCAgCACACc -3' miRNA: 3'- -CCUC-GCCAUCC-CGCUuua------GUaGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 48750 | 0.66 | 0.989819 |
Target: 5'- cGGGGUGGUGGacGCGAGAugucaguccUCGgggaCGCACg -3' miRNA: 3'- -CCUCGCCAUCc-CGCUUU---------AGUa---GUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 105007 | 0.66 | 0.992232 |
Target: 5'- cGGGUGGUcAGGGgGAAGUCcgCGa-- -3' miRNA: 3'- cCUCGCCA-UCCCgCUUUAGuaGUgug -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 4224 | 0.66 | 0.992232 |
Target: 5'- gGGGGCGc--GGGCGgcGUCGUCGuCGu -3' miRNA: 3'- -CCUCGCcauCCCGCuuUAGUAGU-GUg -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 15269 | 0.66 | 0.99109 |
Target: 5'- cGGGCGGUGccccggguuccGGGCGuggcGGUgGUCGCGg -3' miRNA: 3'- cCUCGCCAU-----------CCCGCu---UUAgUAGUGUg -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 151173 | 0.66 | 0.99109 |
Target: 5'- cGGGGgGGU-GGGCGA---CAggGCGCg -3' miRNA: 3'- -CCUCgCCAuCCCGCUuuaGUagUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 56185 | 0.66 | 0.99109 |
Target: 5'- cGGGGgGGUGGGGUGggGUguggugggUACGg -3' miRNA: 3'- -CCUCgCCAUCCCGCuuUAgua-----GUGUg -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 22492 | 0.66 | 0.99109 |
Target: 5'- -aGGCGacGGGGCGA--UCGUcCACACg -3' miRNA: 3'- ccUCGCcaUCCCGCUuuAGUA-GUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 5912 | 0.66 | 0.99109 |
Target: 5'- -aGGCGGgcccggacggGGGGCGGGccguUCcUCGCGCa -3' miRNA: 3'- ccUCGCCa---------UCCCGCUUu---AGuAGUGUG- -5' |
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5250 | 5' | -51.5 | NC_001798.1 | + | 60000 | 0.66 | 0.989819 |
Target: 5'- uGGGGcCGGUGGcGGUGA---CA-CACACg -3' miRNA: 3'- -CCUC-GCCAUC-CCGCUuuaGUaGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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