miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 5' -51.5 NC_001798.1 + 22492 0.66 0.99109
Target:  5'- -aGGCGacGGGGCGA--UCGUcCACACg -3'
miRNA:   3'- ccUCGCcaUCCCGCUuuAGUA-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 15908 0.66 0.989819
Target:  5'- cGGGGUGGgaagGGGGCGuacgGAcCGUCAUc- -3'
miRNA:   3'- -CCUCGCCa---UCCCGCu---UUaGUAGUGug -5'
5250 5' -51.5 NC_001798.1 + 14365 0.66 0.989819
Target:  5'- cGGGGcCGGUGGGuGCGGccccaacagCAgCACACc -3'
miRNA:   3'- -CCUC-GCCAUCC-CGCUuua------GUaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 48750 0.66 0.989819
Target:  5'- cGGGGUGGUGGacGCGAGAugucaguccUCGgggaCGCACg -3'
miRNA:   3'- -CCUCGCCAUCc-CGCUUU---------AGUa---GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 60000 0.66 0.989819
Target:  5'- uGGGGcCGGUGGcGGUGA---CA-CACACg -3'
miRNA:   3'- -CCUC-GCCAUC-CCGCUuuaGUaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 5912 0.66 0.99109
Target:  5'- -aGGCGGgcccggacggGGGGCGGGccguUCcUCGCGCa -3'
miRNA:   3'- ccUCGCCa---------UCCCGCUUu---AGuAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 22340 0.67 0.973947
Target:  5'- cGGAcgcGCGGgcgucGGGGCGggG-CcgCGCAUa -3'
miRNA:   3'- -CCU---CGCCa----UCCCGCuuUaGuaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 78 0.67 0.976568
Target:  5'- cGGcGGCGGgcGGGCGgcAgggCAgcccCGCGCg -3'
miRNA:   3'- -CC-UCGCCauCCCGCuuUa--GUa---GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 30954 0.67 0.976568
Target:  5'- gGGGGCGGgcgggggucGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUCGCCau-------CCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 154416 0.67 0.976568
Target:  5'- cGGcGGCGGgcGGGCGgcAgggCAgcccCGCGCg -3'
miRNA:   3'- -CC-UCGCCauCCCGCuuUa--GUa---GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 74295 0.67 0.97756
Target:  5'- aGGuGCGGgcGGGCGAcguguacccguaccuGAcgUAUUACGCc -3'
miRNA:   3'- -CCuCGCCauCCCGCU---------------UUa-GUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 64505 0.67 0.981221
Target:  5'- cGGAGgGGguGGGCGggGUC--CAgGCa -3'
miRNA:   3'- -CCUCgCCauCCCGCuuUAGuaGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 148414 0.67 0.981221
Target:  5'- cGGGGUGGgcgccGGGGCGggGgugg-GCACg -3'
miRNA:   3'- -CCUCGCCa----UCCCGCuuUaguagUGUG- -5'
5250 5' -51.5 NC_001798.1 + 104723 0.67 0.981221
Target:  5'- cGGuAGCGGUAcugcGGGCGuccgcucUCGUCGC-Cg -3'
miRNA:   3'- -CC-UCGCCAU----CCCGCuuu----AGUAGUGuG- -5'
5250 5' -51.5 NC_001798.1 + 3319 0.67 0.98327
Target:  5'- cGGGGCGGcggcGGcGGCGGGcuucccgcgggcGUCGUCGC-Cg -3'
miRNA:   3'- -CCUCGCCa---UC-CCGCUU------------UAGUAGUGuG- -5'
5250 5' -51.5 NC_001798.1 + 8304 0.67 0.98327
Target:  5'- gGGGGgGGgGGGGCGAGAg-GUCAa-- -3'
miRNA:   3'- -CCUCgCCaUCCCGCUUUagUAGUgug -5'
5250 5' -51.5 NC_001798.1 + 15357 0.67 0.98327
Target:  5'- -aGGCGGUgAGGGgGGAAUCGgccguggGCGCg -3'
miRNA:   3'- ccUCGCCA-UCCCgCUUUAGUag-----UGUG- -5'
5250 5' -51.5 NC_001798.1 + 93612 0.68 0.96808
Target:  5'- uGGAGCGcugcgacGGCGGAGUCAUCgucggGCGCc -3'
miRNA:   3'- -CCUCGCcauc---CCGCUUUAGUAG-----UGUG- -5'
5250 5' -51.5 NC_001798.1 + 46681 0.68 0.96808
Target:  5'- cGGGGcCGGauaccgcgGGGGCGuGAAUaAUCGCGCa -3'
miRNA:   3'- -CCUC-GCCa-------UCCCGC-UUUAgUAGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 8560 0.68 0.96808
Target:  5'- cGAGgGGUgGGGGCGAAGaaggCGcCAUACa -3'
miRNA:   3'- cCUCgCCA-UCCCGCUUUa---GUaGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.