miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 5' -51.5 NC_001798.1 + 16951 0.68 0.95761
Target:  5'- gGGAGCGGggucacuuGGGUGAAAUagcggCAgGCg -3'
miRNA:   3'- -CCUCGCCau------CCCGCUUUAgua--GUgUG- -5'
5250 5' -51.5 NC_001798.1 + 17669 0.7 0.906841
Target:  5'- aGGAGgGGUAGGaucGCGggGUgGuUCAgGCg -3'
miRNA:   3'- -CCUCgCCAUCC---CGCuuUAgU-AGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 22340 0.67 0.973947
Target:  5'- cGGAcgcGCGGgcgucGGGGCGggG-CcgCGCAUa -3'
miRNA:   3'- -CCU---CGCCa----UCCCGCuuUaGuaGUGUG- -5'
5250 5' -51.5 NC_001798.1 + 22492 0.66 0.99109
Target:  5'- -aGGCGacGGGGCGA--UCGUcCACACg -3'
miRNA:   3'- ccUCGCcaUCCCGCUuuAGUA-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 26808 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26838 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26868 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26898 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26928 0.76 0.654978
Target:  5'- gGGGGuCGGgcGGGCGggGUCGggCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUAGUa-GUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26957 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 26987 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 27017 0.7 0.919009
Target:  5'- gGGGGuCGGgcGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUC-GCCauCCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 30954 0.67 0.976568
Target:  5'- gGGGGCGGgcgggggucGGGCGggG--GUCGgGCg -3'
miRNA:   3'- -CCUCGCCau-------CCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 30992 0.66 0.98841
Target:  5'- cGGGCGGgggucGGGCGggG--GUCGgGCg -3'
miRNA:   3'- cCUCGCCau---CCCGCuuUagUAGUgUG- -5'
5250 5' -51.5 NC_001798.1 + 31047 0.66 0.986856
Target:  5'- cGGGCGGgggucGGGCGggGgUCGg-GCACu -3'
miRNA:   3'- cCUCGCCau---CCCGCuuU-AGUagUGUG- -5'
5250 5' -51.5 NC_001798.1 + 32242 0.69 0.935365
Target:  5'- cGGGGCuGGUGGGaGCGucg-CGUC-CGCg -3'
miRNA:   3'- -CCUCG-CCAUCC-CGCuuuaGUAGuGUG- -5'
5250 5' -51.5 NC_001798.1 + 33421 0.68 0.96808
Target:  5'- gGGAGggaGGaGGGGgGggGUCAgcCGCACc -3'
miRNA:   3'- -CCUCg--CCaUCCCgCuuUAGUa-GUGUG- -5'
5250 5' -51.5 NC_001798.1 + 33501 0.76 0.644451
Target:  5'- uGGGGCGGgggcgAGGGCGGuugAAUCAcaACGCa -3'
miRNA:   3'- -CCUCGCCa----UCCCGCU---UUAGUagUGUG- -5'
5250 5' -51.5 NC_001798.1 + 36101 0.66 0.986856
Target:  5'- cGGGUGGUGGGGgGggGcccggcugCGUCuCGCc -3'
miRNA:   3'- cCUCGCCAUCCCgCuuUa-------GUAGuGUG- -5'
5250 5' -51.5 NC_001798.1 + 36423 0.92 0.08899
Target:  5'- cGGGGCGGUGGGGCGggGUCgggGUCGCGg -3'
miRNA:   3'- -CCUCGCCAUCCCGCuuUAG---UAGUGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.