miRNA display CGI


Results 41 - 60 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5252 5' -65.1 NC_001798.1 + 36488 0.66 0.477018
Target:  5'- gGGGgCGCcgGCgCGACgCgGGCGGCCgGg -3'
miRNA:   3'- aCUCgGCGa-CG-GCUG-GgUCGCCGGgC- -5'
5252 5' -65.1 NC_001798.1 + 44990 0.66 0.477018
Target:  5'- gGAGCCGCggcUGCaggaGGCCCuGGCGGUg-- -3'
miRNA:   3'- aCUCGGCG---ACGg---CUGGG-UCGCCGggc -5'
5252 5' -65.1 NC_001798.1 + 103021 0.66 0.477018
Target:  5'- -cGGCCaGCgcgaGCuCGGCCuCGGCGGCCUc -3'
miRNA:   3'- acUCGG-CGa---CG-GCUGG-GUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 110357 0.66 0.477018
Target:  5'- gGAuGCCacccaacaGCaGCUGGCCCAGgGGCCgGu -3'
miRNA:   3'- aCU-CGG--------CGaCGGCUGGGUCgCCGGgC- -5'
5252 5' -65.1 NC_001798.1 + 129341 0.66 0.477018
Target:  5'- -cGGCCGCggagcgcccGCCgGGCCUGGCGGggccCCCGg -3'
miRNA:   3'- acUCGGCGa--------CGG-CUGGGUCGCC----GGGC- -5'
5252 5' -65.1 NC_001798.1 + 150377 0.66 0.477018
Target:  5'- cGGGCgGC-GCgGGCCCGGCcGcGUCCGc -3'
miRNA:   3'- aCUCGgCGaCGgCUGGGUCG-C-CGGGC- -5'
5252 5' -65.1 NC_001798.1 + 25259 0.66 0.468155
Target:  5'- aGGGCgGCUGgCGcCgCCAGCcgccggGGCCCa -3'
miRNA:   3'- aCUCGgCGACgGCuG-GGUCG------CCGGGc -5'
5252 5' -65.1 NC_001798.1 + 45065 0.66 0.468155
Target:  5'- aGAGUCGCUGgaCGAcaCCCGGCGcCUCGu -3'
miRNA:   3'- aCUCGGCGACg-GCU--GGGUCGCcGGGC- -5'
5252 5' -65.1 NC_001798.1 + 147184 0.66 0.468155
Target:  5'- cGGGCgGaaGgCGucccccGCCCGGCGGUCCGg -3'
miRNA:   3'- aCUCGgCgaCgGC------UGGGUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 54568 0.66 0.468155
Target:  5'- cGAGCCcuGC-GCCGGCCgGcCGGCCaCGu -3'
miRNA:   3'- aCUCGG--CGaCGGCUGGgUcGCCGG-GC- -5'
5252 5' -65.1 NC_001798.1 + 149249 0.66 0.468155
Target:  5'- gGGGCguCGCcgGCCGGCgCgGGCGcGCCCu -3'
miRNA:   3'- aCUCG--GCGa-CGGCUG-GgUCGC-CGGGc -5'
5252 5' -65.1 NC_001798.1 + 68946 0.66 0.468155
Target:  5'- -cAGCCGCgccCCGGCCC-GCGuCCCGc -3'
miRNA:   3'- acUCGGCGac-GGCUGGGuCGCcGGGC- -5'
5252 5' -65.1 NC_001798.1 + 133641 0.66 0.467273
Target:  5'- gGAGCUGCUGgacgcccaccgcaUCGACCaCAGC-GCCUGc -3'
miRNA:   3'- aCUCGGCGAC-------------GGCUGG-GUCGcCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 126259 0.66 0.467273
Target:  5'- -cAGCCGCcgGgCGuccggacGCCCaAGCGGCCCc -3'
miRNA:   3'- acUCGGCGa-CgGC-------UGGG-UCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 86829 0.67 0.459377
Target:  5'- --cGUCGCU-CCGGcuCCCGGCccgGGCCCGg -3'
miRNA:   3'- acuCGGCGAcGGCU--GGGUCG---CCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 72346 0.67 0.459377
Target:  5'- gGAGCuCGCcgagcgcGCCGACCCccUGGUCCGc -3'
miRNA:   3'- aCUCG-GCGa------CGGCUGGGucGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 61891 0.67 0.459377
Target:  5'- cGGGCgCGCccucgaaGCCGGCCCuGC-GCCUGg -3'
miRNA:   3'- aCUCG-GCGa------CGGCUGGGuCGcCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 35575 0.67 0.459377
Target:  5'- gGAGCCcgcggcGCUGCuCGGCU--GCGGCCgCGg -3'
miRNA:   3'- aCUCGG------CGACG-GCUGGguCGCCGG-GC- -5'
5252 5' -65.1 NC_001798.1 + 154156 0.67 0.450687
Target:  5'- cGGGCgGCUG--GGCUCGGCguaGGCCCGg -3'
miRNA:   3'- aCUCGgCGACggCUGGGUCG---CCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 134957 0.67 0.450687
Target:  5'- gGGcGCCGCggccacccaUGCCGcguGCCUGGgGGCCUGg -3'
miRNA:   3'- aCU-CGGCG---------ACGGC---UGGGUCgCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.