miRNA display CGI


Results 21 - 40 of 219 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5252 5' -65.1 NC_001798.1 + 51474 0.66 0.504088
Target:  5'- cGGGCCGCgUGUCgGGCCCggagcugcaGGCGGCa-- -3'
miRNA:   3'- aCUCGGCG-ACGG-CUGGG---------UCGCCGggc -5'
5252 5' -65.1 NC_001798.1 + 85152 0.66 0.504088
Target:  5'- cGAgGCCcuguGC-GCCGAgcuCCUGGCGGCCUGu -3'
miRNA:   3'- aCU-CGG----CGaCGGCU---GGGUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 91868 0.66 0.504088
Target:  5'- -cGGCCGCcccgGCCGAgcauaCCCAGCucugGGCCg- -3'
miRNA:   3'- acUCGGCGa---CGGCU-----GGGUCG----CCGGgc -5'
5252 5' -65.1 NC_001798.1 + 39105 0.66 0.504088
Target:  5'- -uGGCCuugGCUGUCGAC---GCGGCCCGc -3'
miRNA:   3'- acUCGG---CGACGGCUGgguCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 54467 0.66 0.504088
Target:  5'- cGGGCuCGCccccacUCGACCCccGCGGCCCc -3'
miRNA:   3'- aCUCG-GCGac----GGCUGGGu-CGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 22098 0.66 0.498619
Target:  5'- gGAGCCGCccgcggaccaacggGgCGACCUcGcCGGCCCc -3'
miRNA:   3'- aCUCGGCGa-------------CgGCUGGGuC-GCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 41352 0.66 0.494988
Target:  5'- cGuGCaCGUUcaUGACCCGGCGGCUCa -3'
miRNA:   3'- aCuCG-GCGAcgGCUGGGUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 146993 0.66 0.494988
Target:  5'- aGGGuCCGCcucuUGCCucgggGACCCccgGGCGGgCCGg -3'
miRNA:   3'- aCUC-GGCG----ACGG-----CUGGG---UCGCCgGGC- -5'
5252 5' -65.1 NC_001798.1 + 25430 0.66 0.494988
Target:  5'- -uGGCCGCgcgcugcGCCGccccgcccCCCGGCGGCgCGc -3'
miRNA:   3'- acUCGGCGa------CGGCu-------GGGUCGCCGgGC- -5'
5252 5' -65.1 NC_001798.1 + 134164 0.66 0.494988
Target:  5'- gGGGCCGUcgcgGCCG-CCCGcgccgcGaCGGCCCc -3'
miRNA:   3'- aCUCGGCGa---CGGCuGGGU------C-GCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 54853 0.66 0.494988
Target:  5'- --cGCCGCcGCCG-CCUGGCcGGCCg- -3'
miRNA:   3'- acuCGGCGaCGGCuGGGUCG-CCGGgc -5'
5252 5' -65.1 NC_001798.1 + 134637 0.66 0.494988
Target:  5'- cGAGgUGUgcgagGUCGGCCU-GCGGCCCc -3'
miRNA:   3'- aCUCgGCGa----CGGCUGGGuCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 2798 0.66 0.485963
Target:  5'- cGGGCucCGCggcagcGCCgGGCCCAG-GGCCCc -3'
miRNA:   3'- aCUCG--GCGa-----CGG-CUGGGUCgCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 15529 0.66 0.485963
Target:  5'- gGAGgCGCUGCUGguguucguguGCCCGGC--CCCGg -3'
miRNA:   3'- aCUCgGCGACGGC----------UGGGUCGccGGGC- -5'
5252 5' -65.1 NC_001798.1 + 23801 0.66 0.485963
Target:  5'- gGAGCCGUggcccgggGCCGGCCCcccGCc-CCCGg -3'
miRNA:   3'- aCUCGGCGa-------CGGCUGGGu--CGccGGGC- -5'
5252 5' -65.1 NC_001798.1 + 92112 0.66 0.485963
Target:  5'- cGGGCagcaGCcGUCGACCaCGcGCGGCCUc -3'
miRNA:   3'- aCUCGg---CGaCGGCUGG-GU-CGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 25650 0.66 0.485963
Target:  5'- cGGGCUGUccUGCCug-CUGGCGGCCCu -3'
miRNA:   3'- aCUCGGCG--ACGGcugGGUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 44386 0.66 0.485963
Target:  5'- aGAGuuGCUgugacguggGCCGGgagcaaugggguCCC-GCGGCCCa -3'
miRNA:   3'- aCUCggCGA---------CGGCU------------GGGuCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 39519 0.66 0.485065
Target:  5'- cGAGCUGCUccccuccgcGCCGcGCCUcgccgugGGUGGCgCCGg -3'
miRNA:   3'- aCUCGGCGA---------CGGC-UGGG-------UCGCCG-GGC- -5'
5252 5' -65.1 NC_001798.1 + 129341 0.66 0.477018
Target:  5'- -cGGCCGCggagcgcccGCCgGGCCUGGCGGggccCCCGg -3'
miRNA:   3'- acUCGGCGa--------CGG-CUGGGUCGCC----GGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.