miRNA display CGI


Results 21 - 40 of 219 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5252 5' -65.1 NC_001798.1 + 75455 0.73 0.176028
Target:  5'- -aGGCCGgggugGCCGGCCCGgccGCGGCCCu -3'
miRNA:   3'- acUCGGCga---CGGCUGGGU---CGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 4908 0.73 0.176028
Target:  5'- gGGGCCGCcgGUCGuCuCCGccGCGGCCCGg -3'
miRNA:   3'- aCUCGGCGa-CGGCuG-GGU--CGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 70960 0.73 0.180263
Target:  5'- --cGCCGCUGCUGGCCCAGUuucagcacacGGUgCGg -3'
miRNA:   3'- acuCGGCGACGGCUGGGUCG----------CCGgGC- -5'
5252 5' -65.1 NC_001798.1 + 22935 0.73 0.180263
Target:  5'- cGAcGCCGCcgccgaUGCCGugCCgacgaGGCGGCCCc -3'
miRNA:   3'- aCU-CGGCG------ACGGCugGG-----UCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 66973 0.73 0.184152
Target:  5'- gGAGUCGCUGUcaucgucgucaguCGcCCCuGCGGCCCa -3'
miRNA:   3'- aCUCGGCGACG-------------GCuGGGuCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 85296 0.73 0.189005
Target:  5'- gGGGCCGggGUCcGCCC-GCGGCCCGc -3'
miRNA:   3'- aCUCGGCgaCGGcUGGGuCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 135714 0.73 0.198118
Target:  5'- gGGGCCGCguaCG-CCCGGCGGCCg- -3'
miRNA:   3'- aCUCGGCGacgGCuGGGUCGCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 23596 0.72 0.207611
Target:  5'- cGAGcCCGCccaggGCCGAgCCCGcccCGGCCCGg -3'
miRNA:   3'- aCUC-GGCGa----CGGCU-GGGUc--GCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 98578 0.72 0.217495
Target:  5'- -uGGCCGCgguggcgucgGCgGcCCCGGCGGCCCc -3'
miRNA:   3'- acUCGGCGa---------CGgCuGGGUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 4044 0.72 0.217495
Target:  5'- --cGCCGC-GCgGGCCCggcggcgcuccaGGCGGCCCGc -3'
miRNA:   3'- acuCGGCGaCGgCUGGG------------UCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 83333 0.71 0.238471
Target:  5'- aGGGCCGCaGCCauucGGCCgCGGCGucGCCCGc -3'
miRNA:   3'- aCUCGGCGaCGG----CUGG-GUCGC--CGGGC- -5'
5252 5' -65.1 NC_001798.1 + 25601 0.71 0.243418
Target:  5'- cGGGCCGCgccggggGCgGGCCCcccccggAGUGGUCCGc -3'
miRNA:   3'- aCUCGGCGa------CGgCUGGG-------UCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 72238 0.71 0.243973
Target:  5'- cGAGCaGCUG-CGGCCC-GCGGUCCa -3'
miRNA:   3'- aCUCGgCGACgGCUGGGuCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 27881 0.71 0.243973
Target:  5'- cGGGCCuacGCCGAgCCCAGCcGCCCGc -3'
miRNA:   3'- aCUCGGcgaCGGCU-GGGUCGcCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 71237 0.71 0.243973
Target:  5'- gGAGCCGCccuccGCCGggGCCCAGCaacGGCUCc -3'
miRNA:   3'- aCUCGGCGa----CGGC--UGGGUCG---CCGGGc -5'
5252 5' -65.1 NC_001798.1 + 34792 0.71 0.243973
Target:  5'- --cGCCGCcgGCgCGGCCCGG-GGCCCc -3'
miRNA:   3'- acuCGGCGa-CG-GCUGGGUCgCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 25208 0.71 0.243973
Target:  5'- --cGCCGCgccccgcggcGCUGACCCGcCGGCCCGc -3'
miRNA:   3'- acuCGGCGa---------CGGCUGGGUcGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 32374 0.71 0.24958
Target:  5'- cGAGcCCGggGCCcgcGACCCGGCG-CCCGg -3'
miRNA:   3'- aCUC-GGCgaCGG---CUGGGUCGCcGGGC- -5'
5252 5' -65.1 NC_001798.1 + 123449 0.71 0.24958
Target:  5'- cGAcGCgCGCgcccCCGACCCGG-GGCCCGa -3'
miRNA:   3'- aCU-CG-GCGac--GGCUGGGUCgCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 67093 0.71 0.24958
Target:  5'- cGGGCCGuCUGaccaUGACUCcGCGGCCCc -3'
miRNA:   3'- aCUCGGC-GACg---GCUGGGuCGCCGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.