miRNA display CGI


Results 21 - 40 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5252 5' -65.1 NC_001798.1 + 15529 0.66 0.485963
Target:  5'- gGAGgCGCUGCUGguguucguguGCCCGGC--CCCGg -3'
miRNA:   3'- aCUCgGCGACGGC----------UGGGUCGccGGGC- -5'
5252 5' -65.1 NC_001798.1 + 15985 0.66 0.522498
Target:  5'- gUGGGUCGUgccauCCGAauaaaCguGCGGCCCGu -3'
miRNA:   3'- -ACUCGGCGac---GGCUg----GguCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 21699 0.7 0.298312
Target:  5'- --cGCCGCUGCCGuCCCGGUcuccGCCgCGc -3'
miRNA:   3'- acuCGGCGACGGCuGGGUCGc---CGG-GC- -5'
5252 5' -65.1 NC_001798.1 + 22098 0.66 0.498619
Target:  5'- gGAGCCGCccgcggaccaacggGgCGACCUcGcCGGCCCc -3'
miRNA:   3'- aCUCGGCGa-------------CgGCUGGGuC-GCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 22789 0.76 0.113674
Target:  5'- cGGGCCGCgGCgGAgacgaCCGGCGGCCCc -3'
miRNA:   3'- aCUCGGCGaCGgCUg----GGUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 22935 0.73 0.180263
Target:  5'- cGAcGCCGCcgccgaUGCCGugCCgacgaGGCGGCCCc -3'
miRNA:   3'- aCU-CGGCG------ACGGCugGG-----UCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 23020 0.69 0.33949
Target:  5'- --cGCCGCggcaGCUGGCCCuGCuGGCCuCGa -3'
miRNA:   3'- acuCGGCGa---CGGCUGGGuCG-CCGG-GC- -5'
5252 5' -65.1 NC_001798.1 + 23218 0.67 0.433584
Target:  5'- cGGGCCGCUggguccGCgGACCgGagacgacguccGCGGUCCGc -3'
miRNA:   3'- aCUCGGCGA------CGgCUGGgU-----------CGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 23596 0.72 0.207611
Target:  5'- cGAGcCCGCccaggGCCGAgCCCGcccCGGCCCGg -3'
miRNA:   3'- aCUC-GGCGa----CGGCU-GGGUc--GCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 23647 0.67 0.442089
Target:  5'- cGGGCCGCcuggagcgccGCCgGGCCCGcGCGGCgguggCCGg -3'
miRNA:   3'- aCUCGGCGa---------CGG-CUGGGU-CGCCG-----GGC- -5'
5252 5' -65.1 NC_001798.1 + 23701 0.79 0.074303
Target:  5'- cGGGCCGCUuCaCGGCCgGGCGGCCCc -3'
miRNA:   3'- aCUCGGCGAcG-GCUGGgUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 23801 0.66 0.485963
Target:  5'- gGAGCCGUggcccgggGCCGGCCCcccGCc-CCCGg -3'
miRNA:   3'- aCUCGGCGa-------CGGCUGGGu--CGccGGGC- -5'
5252 5' -65.1 NC_001798.1 + 24174 0.67 0.442089
Target:  5'- cGGGCCGCUucgGCUggGGCCUggcgcacguGGCGGCCg- -3'
miRNA:   3'- aCUCGGCGA---CGG--CUGGG---------UCGCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 24588 0.7 0.291838
Target:  5'- cGGGCCGCgugGCCGuggaguGCCUGGCcGCCUGc -3'
miRNA:   3'- aCUCGGCGa--CGGC------UGGGUCGcCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 24634 0.67 0.445517
Target:  5'- gGAGgCGCUgGCggagggcuucgacggCGACCUGGCGGCCg- -3'
miRNA:   3'- aCUCgGCGA-CG---------------GCUGGGUCGCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 24689 0.68 0.408653
Target:  5'- gGAGCCcgGCccGCCGcgcccccgcGCCCGG-GGCCCGc -3'
miRNA:   3'- aCUCGG--CGa-CGGC---------UGGGUCgCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 24881 0.68 0.408653
Target:  5'- gUGAGCCugGUcGCCGggGCCCuG-GGCCCGg -3'
miRNA:   3'- -ACUCGG--CGaCGGC--UGGGuCgCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 25011 0.67 0.442089
Target:  5'- --cGCCGCgGCCGACUCGcucGCcGcGCCCGc -3'
miRNA:   3'- acuCGGCGaCGGCUGGGU---CG-C-CGGGC- -5'
5252 5' -65.1 NC_001798.1 + 25124 0.7 0.304897
Target:  5'- aGAGCCGCgcggacGCCccccGCCCcGCGGCCg- -3'
miRNA:   3'- aCUCGGCGa-----CGGc---UGGGuCGCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 25208 0.71 0.243973
Target:  5'- --cGCCGCgccccgcggcGCUGACCCGcCGGCCCGc -3'
miRNA:   3'- acuCGGCGa---------CGGCUGGGUcGCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.