miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5252 5' -65.1 NC_001798.1 + 1222 0.69 0.328118
Target:  5'- cGGcCCGCgGCCGacGCCCAGCguaucugcgggggcgGGCCCGc -3'
miRNA:   3'- aCUcGGCGaCGGC--UGGGUCG---------------CCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 1990 0.66 0.513259
Target:  5'- gGGGCgcgguccaGUUGCCcGCCCAgGCGGCCg- -3'
miRNA:   3'- aCUCGg-------CGACGGcUGGGU-CGCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 2101 0.67 0.442089
Target:  5'- gGGGcCCGCccccgGCgCGGCCC-GCGGCCa- -3'
miRNA:   3'- aCUC-GGCGa----CG-GCUGGGuCGCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 2203 0.74 0.163849
Target:  5'- -aGGCCGCcGCgCGGCgCAGCGgGCCCGa -3'
miRNA:   3'- acUCGGCGaCG-GCUGgGUCGC-CGGGC- -5'
5252 5' -65.1 NC_001798.1 + 2433 0.69 0.33949
Target:  5'- cUGGGCCccggcgGCUGgCGGCgCCAGCcGCCCu -3'
miRNA:   3'- -ACUCGG------CGACgGCUG-GGUCGcCGGGc -5'
5252 5' -65.1 NC_001798.1 + 2608 0.7 0.291838
Target:  5'- gGGGgCGCggggcGCCG-CCCGGCGGCgCCc -3'
miRNA:   3'- aCUCgGCGa----CGGCuGGGUCGCCG-GGc -5'
5252 5' -65.1 NC_001798.1 + 2798 0.66 0.485963
Target:  5'- cGGGCucCGCggcagcGCCgGGCCCAG-GGCCCc -3'
miRNA:   3'- aCUCG--GCGa-----CGG-CUGGGUCgCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 2977 0.68 0.384636
Target:  5'- cGuGCgGCggggcgGCCGGCCC-GCGGgcCCCGg -3'
miRNA:   3'- aCuCGgCGa-----CGGCUGGGuCGCC--GGGC- -5'
5252 5' -65.1 NC_001798.1 + 3513 0.7 0.272467
Target:  5'- -cGGCCGCcacgugcGCCaGGCCCcagccgaAGCGGCCCGc -3'
miRNA:   3'- acUCGGCGa------CGG-CUGGG-------UCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 3607 0.68 0.411925
Target:  5'- gGAGCUGCUGUUgcgcgccgcgcccgaGAUCCGGaagcaGGCCUGg -3'
miRNA:   3'- aCUCGGCGACGG---------------CUGGGUCg----CCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 3853 0.67 0.425175
Target:  5'- gGGGCgGCUGUCG-CCCAGCccGCCg- -3'
miRNA:   3'- aCUCGgCGACGGCuGGGUCGc-CGGgc -5'
5252 5' -65.1 NC_001798.1 + 3998 0.76 0.113674
Target:  5'- gGGGCCGC--CCGGCCgugaAGCGGCCCGu -3'
miRNA:   3'- aCUCGGCGacGGCUGGg---UCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 4044 0.72 0.217495
Target:  5'- --cGCCGC-GCgGGCCCggcggcgcuccaGGCGGCCCGc -3'
miRNA:   3'- acuCGGCGaCGgCUGGG------------UCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 4096 0.68 0.392537
Target:  5'- cGGGCCGggGCgGGCUCGGCccugggcgGGCUCGg -3'
miRNA:   3'- aCUCGGCgaCGgCUGGGUCG--------CCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 4473 0.74 0.167421
Target:  5'- gGAcGUCGuCUccgguccGCgGACCCAGCGGCCCGc -3'
miRNA:   3'- aCU-CGGC-GA-------CGgCUGGGUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 4687 0.66 0.522498
Target:  5'- aGGGCCaGCUGCCGcggcgagacgacGCCguccgCGGCaGGCUCGu -3'
miRNA:   3'- aCUCGG-CGACGGC------------UGG-----GUCG-CCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 4908 0.73 0.176028
Target:  5'- gGGGCCGCcgGUCGuCuCCGccGCGGCCCGg -3'
miRNA:   3'- aCUCGGCGa-CGGCuG-GGU--CGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 5722 0.68 0.369153
Target:  5'- cGAG-CGCUGgCGcccuGCCCGG-GGCCCGc -3'
miRNA:   3'- aCUCgGCGACgGC----UGGGUCgCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 8691 0.69 0.342377
Target:  5'- gUGcGCCGCcGUCGGCgCCuuaggaccgacugcuGGCGGCCCa -3'
miRNA:   3'- -ACuCGGCGaCGGCUG-GG---------------UCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 12259 0.66 0.504088
Target:  5'- gGGGCCGCggacgaccagGCCgguggcgcaGACCCAcaGGCCCa -3'
miRNA:   3'- aCUCGGCGa---------CGG---------CUGGGUcgCCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.