miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5252 5' -65.1 NC_001798.1 + 57116 1.08 0.000511
Target:  5'- aUGAGCCGCUGCCGACCCAGCGGCCCGa -3'
miRNA:   3'- -ACUCGGCGACGGCUGGGUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 61861 0.82 0.04027
Target:  5'- cGGGCCGCcgGCCcaGCCCGGCGGCCCc -3'
miRNA:   3'- aCUCGGCGa-CGGc-UGGGUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 35547 0.81 0.050733
Target:  5'- cGGGgCGUUGCCGGCCCGGCccGGCCCc -3'
miRNA:   3'- aCUCgGCGACGGCUGGGUCG--CCGGGc -5'
5252 5' -65.1 NC_001798.1 + 23701 0.79 0.074303
Target:  5'- cGGGCCGCUuCaCGGCCgGGCGGCCCc -3'
miRNA:   3'- aCUCGGCGAcG-GCUGGgUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 26334 0.78 0.078151
Target:  5'- cUGGGgCGCgacGCCGugCgCGGCGGCCCGg -3'
miRNA:   3'- -ACUCgGCGa--CGGCugG-GUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 58103 0.78 0.078151
Target:  5'- aGGGUCGCgGCCG-CCCAG-GGCCCGg -3'
miRNA:   3'- aCUCGGCGaCGGCuGGGUCgCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 146576 0.78 0.080956
Target:  5'- cGGGCCGCgggccagcagacggGCCGcgGCgCCAGCGGCCCa -3'
miRNA:   3'- aCUCGGCGa-------------CGGC--UG-GGUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 35445 0.78 0.082188
Target:  5'- gUGGGCCGCUggcGCCGcgGCCCGucugcuggcccGCGGCCCGu -3'
miRNA:   3'- -ACUCGGCGA---CGGC--UGGGU-----------CGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 62263 0.78 0.082188
Target:  5'- cGAGCCGaucccagGCCcGCCgGGCGGCCCGg -3'
miRNA:   3'- aCUCGGCga-----CGGcUGGgUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 77652 0.76 0.110897
Target:  5'- uUGAgGCCGCcgucGCCGACCUgacggcgaagauGGCGGCCCa -3'
miRNA:   3'- -ACU-CGGCGa---CGGCUGGG------------UCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 22789 0.76 0.113674
Target:  5'- cGGGCCGCgGCgGAgacgaCCGGCGGCCCc -3'
miRNA:   3'- aCUCGGCGaCGgCUg----GGUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 3998 0.76 0.113674
Target:  5'- gGGGCCGC--CCGGCCgugaAGCGGCCCGu -3'
miRNA:   3'- aCUCGGCGacGGCUGGg---UCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 49642 0.76 0.113674
Target:  5'- aUGGGCCGCguacGCCGAgCagaugauGCGGCCCGa -3'
miRNA:   3'- -ACUCGGCGa---CGGCUgGgu-----CGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 72293 0.76 0.1221
Target:  5'- aGcAGCCuGCUGCUGAucagcauguacgcCCUGGCGGCCCGg -3'
miRNA:   3'- aC-UCGG-CGACGGCU-------------GGGUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 92941 0.74 0.152433
Target:  5'- cGGGcCCGCcGCCGugGCCCuGCGuGCCCGg -3'
miRNA:   3'- aCUC-GGCGaCGGC--UGGGuCGC-CGGGC- -5'
5252 5' -65.1 NC_001798.1 + 2203 0.74 0.163849
Target:  5'- -aGGCCGCcGCgCGGCgCAGCGgGCCCGa -3'
miRNA:   3'- acUCGGCGaCG-GCUGgGUCGC-CGGGC- -5'
5252 5' -65.1 NC_001798.1 + 123578 0.74 0.163849
Target:  5'- cGAGCCGCUGU--GCCaGGUGGCCCu -3'
miRNA:   3'- aCUCGGCGACGgcUGGgUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 4473 0.74 0.167421
Target:  5'- gGAcGUCGuCUccgguccGCgGACCCAGCGGCCCGc -3'
miRNA:   3'- aCU-CGGC-GA-------CGgCUGGGUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 25496 0.74 0.167822
Target:  5'- cGGGcCCGCUGCgCcGCgCGGCGGCCUGg -3'
miRNA:   3'- aCUC-GGCGACG-GcUGgGUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 96173 0.74 0.167822
Target:  5'- -cGGCCGCgcccccgGCCGcgguuuccgaGCCCAcuGCGGCCCGa -3'
miRNA:   3'- acUCGGCGa------CGGC----------UGGGU--CGCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.