miRNA display CGI


Results 1 - 20 of 219 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5252 5' -65.1 NC_001798.1 + 154291 0.69 0.354102
Target:  5'- cGGGCCGUguUGCgGGCCCucuuaaggggcGGCGGCaggaCGg -3'
miRNA:   3'- aCUCGGCG--ACGgCUGGG-----------UCGCCGg---GC- -5'
5252 5' -65.1 NC_001798.1 + 154156 0.67 0.450687
Target:  5'- cGGGCgGCUG--GGCUCGGCguaGGCCCGg -3'
miRNA:   3'- aCUCGgCGACggCUGGGUCG---CCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 154099 0.67 0.441234
Target:  5'- cGGGgCGCgGCCGGcgccggggacCCCGGCGGCggggaccCCGg -3'
miRNA:   3'- aCUCgGCGaCGGCU----------GGGUCGCCG-------GGC- -5'
5252 5' -65.1 NC_001798.1 + 153694 0.69 0.354102
Target:  5'- gGGGCCGCcGCCGGCgCAGgcucaGGCgCGc -3'
miRNA:   3'- aCUCGGCGaCGGCUGgGUCg----CCGgGC- -5'
5252 5' -65.1 NC_001798.1 + 153399 0.68 0.361573
Target:  5'- -cGGUCGCgGUCGGCCCGcucGCGcGCCCa -3'
miRNA:   3'- acUCGGCGaCGGCUGGGU---CGC-CGGGc -5'
5252 5' -65.1 NC_001798.1 + 153190 0.69 0.349672
Target:  5'- cGAgGCCGCccucGCCGguucaacccuagaccGCCCGaCGGCCCGg -3'
miRNA:   3'- aCU-CGGCGa---CGGC---------------UGGGUcGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 152726 0.68 0.376841
Target:  5'- gGGGCCGaucaGCCcacccACCCGGCGGCgCGc -3'
miRNA:   3'- aCUCGGCga--CGGc----UGGGUCGCCGgGC- -5'
5252 5' -65.1 NC_001798.1 + 152383 0.69 0.354102
Target:  5'- cGGGCCGCcGCUccgucgcucgcaGugCCGgggugcgaauGCGGCCCGa -3'
miRNA:   3'- aCUCGGCGaCGG------------CugGGU----------CGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 152291 0.69 0.325319
Target:  5'- aUGAGCCGggGUaggguaGACUCgagacGGCGGCCCGc -3'
miRNA:   3'- -ACUCGGCgaCGg-----CUGGG-----UCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 152202 0.66 0.512339
Target:  5'- gGGGUCGCccucucaccgUGCCGggggucuGCCgCGGCGGCCg- -3'
miRNA:   3'- aCUCGGCG----------ACGGC-------UGG-GUCGCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 151265 0.68 0.408653
Target:  5'- -cGGCCG-UGCCGGCCCGcaCGGCCg- -3'
miRNA:   3'- acUCGGCgACGGCUGGGUc-GCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 150377 0.66 0.477018
Target:  5'- cGGGCgGC-GCgGGCCCGGCcGcGUCCGc -3'
miRNA:   3'- aCUCGgCGaCGgCUGGGUCG-C-CGGGC- -5'
5252 5' -65.1 NC_001798.1 + 150175 0.67 0.422671
Target:  5'- cGGGCCGCcGCC--CCCuccgcggcguggggGGCGGCaCCGg -3'
miRNA:   3'- aCUCGGCGaCGGcuGGG--------------UCGCCG-GGC- -5'
5252 5' -65.1 NC_001798.1 + 150019 0.66 0.513259
Target:  5'- -uGGCCGCgGUCG-CCCGaguccgaguccGgGGCCCGg -3'
miRNA:   3'- acUCGGCGaCGGCuGGGU-----------CgCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 149249 0.66 0.468155
Target:  5'- gGGGCguCGCcgGCCGGCgCgGGCGcGCCCu -3'
miRNA:   3'- aCUCG--GCGa-CGGCUG-GgUCGC-CGGGc -5'
5252 5' -65.1 NC_001798.1 + 147184 0.66 0.468155
Target:  5'- cGGGCgGaaGgCGucccccGCCCGGCGGUCCGg -3'
miRNA:   3'- aCUCGgCgaCgGC------UGGGUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 146993 0.66 0.494988
Target:  5'- aGGGuCCGCcucuUGCCucgggGACCCccgGGCGGgCCGg -3'
miRNA:   3'- aCUC-GGCG----ACGG-----CUGGG---UCGCCgGGC- -5'
5252 5' -65.1 NC_001798.1 + 146576 0.78 0.080956
Target:  5'- cGGGCCGCgggccagcagacggGCCGcgGCgCCAGCGGCCCa -3'
miRNA:   3'- aCUCGGCGa-------------CGGC--UG-GGUCGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 146489 0.67 0.416864
Target:  5'- gGGGCCGg-GCCGGgCCGGCaacGCCCc -3'
miRNA:   3'- aCUCGGCgaCGGCUgGGUCGc--CGGGc -5'
5252 5' -65.1 NC_001798.1 + 146451 0.66 0.522498
Target:  5'- gGAGcCCGCgGCCGcaGCCgAGCaGCgCCGc -3'
miRNA:   3'- aCUC-GGCGaCGGC--UGGgUCGcCG-GGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.