miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 3' -60.2 NC_001798.1 + 79532 0.66 0.715012
Target:  5'- cGGCGGagacCCGggGCCccugGUGCUGCgugaGGCc -3'
miRNA:   3'- -CCGUCgu--GGCuaCGG----CACGGCGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 25166 0.66 0.709195
Target:  5'- cGGgGGCcgcgccccccgccccGCCGAcGCCGccGCCGC-GGCc -3'
miRNA:   3'- -CCgUCG---------------UGGCUaCGGCa-CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 65798 0.66 0.705304
Target:  5'- -aCAGC-CCGAUGCCcccGuuGCgGGCg -3'
miRNA:   3'- ccGUCGuGGCUACGGca-CggCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 14823 0.66 0.705304
Target:  5'- cGGCcGCGCCaaaGuuGUGCUGCcaaGGCg -3'
miRNA:   3'- -CCGuCGUGGcuaCggCACGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 28649 0.66 0.705304
Target:  5'- gGGCcgaccGCgACCGGUuCCGgcGCCGCgUGGCg -3'
miRNA:   3'- -CCGu----CG-UGGCUAcGGCa-CGGCG-ACCG- -5'
5253 3' -60.2 NC_001798.1 + 84600 0.66 0.705304
Target:  5'- cGGUcccGGUGCCGGUGCCccGCCGaaGcGCg -3'
miRNA:   3'- -CCG---UCGUGGCUACGGcaCGGCgaC-CG- -5'
5253 3' -60.2 NC_001798.1 + 104523 0.66 0.705304
Target:  5'- cGGCGGCGCgGuUGaCGUcGUCGCggugGGCc -3'
miRNA:   3'- -CCGUCGUGgCuACgGCA-CGGCGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 115587 0.66 0.705304
Target:  5'- cGGCAGCGCCucgcccacgGCCGgGuCCGgUGGg -3'
miRNA:   3'- -CCGUCGUGGcua------CGGCaC-GGCgACCg -5'
5253 3' -60.2 NC_001798.1 + 50916 0.66 0.703355
Target:  5'- cGGCcaccauguccguGCGCgGGcaUGCCGUacGCCGgaGGCg -3'
miRNA:   3'- -CCGu-----------CGUGgCU--ACGGCA--CGGCgaCCG- -5'
5253 3' -60.2 NC_001798.1 + 58673 0.67 0.695537
Target:  5'- aGGCccgccacCACCGccGCCGUcaggGCCGCggcGGCg -3'
miRNA:   3'- -CCGuc-----GUGGCuaCGGCA----CGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 96667 0.67 0.695537
Target:  5'- aGCGGCGCCacgGCCGcGCUGgaGcGCg -3'
miRNA:   3'- cCGUCGUGGcuaCGGCaCGGCgaC-CG- -5'
5253 3' -60.2 NC_001798.1 + 151219 0.67 0.695537
Target:  5'- aGGgAGCGCgGG-GCCGU-CCGCgGGUu -3'
miRNA:   3'- -CCgUCGUGgCUaCGGCAcGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 4069 0.67 0.695537
Target:  5'- aGGCGGC-CCGcgGUC--GCCGCgggGGUc -3'
miRNA:   3'- -CCGUCGuGGCuaCGGcaCGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 95686 0.67 0.695537
Target:  5'- cGGCGGCGgCGGgggcgGCCGgcGUCGCccgaaagcgGGCg -3'
miRNA:   3'- -CCGUCGUgGCUa----CGGCa-CGGCGa--------CCG- -5'
5253 3' -60.2 NC_001798.1 + 31995 0.67 0.691616
Target:  5'- gGGCGGCGCCGc-GCCGgGCCcCggacucggacucgGGCg -3'
miRNA:   3'- -CCGUCGUGGCuaCGGCaCGGcGa------------CCG- -5'
5253 3' -60.2 NC_001798.1 + 91578 0.67 0.689653
Target:  5'- cGGgGGCGCCGcgGuuucuuuuuaucggcCCGgcagGCCGCgcuuaugGGCg -3'
miRNA:   3'- -CCgUCGUGGCuaC---------------GGCa---CGGCGa------CCG- -5'
5253 3' -60.2 NC_001798.1 + 2708 0.67 0.68572
Target:  5'- cGCGGCGaCGGUGUCG-GCCaGCagggGGCg -3'
miRNA:   3'- cCGUCGUgGCUACGGCaCGG-CGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 132132 0.67 0.68572
Target:  5'- aGGCGGCcCUGcgccGCCGgggGCCgGCgGGCg -3'
miRNA:   3'- -CCGUCGuGGCua--CGGCa--CGG-CGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 34958 0.67 0.68572
Target:  5'- cGCGGCGCCGGagggGgCG-GCCGCcgaGGUg -3'
miRNA:   3'- cCGUCGUGGCUa---CgGCaCGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 87180 0.67 0.68572
Target:  5'- uGCAGCGCgGgcGaCGgGCgGCUGGCc -3'
miRNA:   3'- cCGUCGUGgCuaCgGCaCGgCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.