miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 3' -60.2 NC_001798.1 + 4408 0.67 0.665969
Target:  5'- cGGCggGGCGCCGGggGUCGcgGCgacagGCUGGCc -3'
miRNA:   3'- -CCG--UCGUGGCUa-CGGCa-CGg----CGACCG- -5'
5253 3' -60.2 NC_001798.1 + 4699 0.69 0.566847
Target:  5'- cGCGGCGagaCGAcGCCGU-CCGC-GGCa -3'
miRNA:   3'- cCGUCGUg--GCUaCGGCAcGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 5395 0.68 0.636168
Target:  5'- cGGCGGC-CCGuuggucgcGCCGccGCCGCUccgcccgcgcGGCa -3'
miRNA:   3'- -CCGUCGuGGCua------CGGCa-CGGCGA----------CCG- -5'
5253 3' -60.2 NC_001798.1 + 9155 0.67 0.684736
Target:  5'- cGCGGCGCCGc--CCGcGCCGgggggcagggucuCUGGCg -3'
miRNA:   3'- cCGUCGUGGCuacGGCaCGGC-------------GACCG- -5'
5253 3' -60.2 NC_001798.1 + 12678 0.67 0.684736
Target:  5'- cGGCcagcGCGCCGAUGaucaggcCCGgGuuGCUGGg -3'
miRNA:   3'- -CCGu---CGUGGCUAC-------GGCaCggCGACCg -5'
5253 3' -60.2 NC_001798.1 + 12883 0.67 0.67981
Target:  5'- cGGCAGCaggguGCUGGUguacgggggcuugggGCCGUGCCaCccGGCg -3'
miRNA:   3'- -CCGUCG-----UGGCUA---------------CGGCACGGcGa-CCG- -5'
5253 3' -60.2 NC_001798.1 + 12981 0.7 0.471858
Target:  5'- gGGUAGCAucCCGAUGCUGUcgaccgucacGCCcuGUUGGUa -3'
miRNA:   3'- -CCGUCGU--GGCUACGGCA----------CGG--CGACCG- -5'
5253 3' -60.2 NC_001798.1 + 14823 0.66 0.705304
Target:  5'- cGGCcGCGCCaaaGuuGUGCUGCcaaGGCg -3'
miRNA:   3'- -CCGuCGUGGcuaCggCACGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 15554 0.66 0.753092
Target:  5'- -cCGGCcCCGGgcguUGCCGccGCCGC-GGCg -3'
miRNA:   3'- ccGUCGuGGCU----ACGGCa-CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 17984 0.74 0.315298
Target:  5'- gGGgGGCugCGcgGCCcggaacaggaggaugGCCGCUGGCu -3'
miRNA:   3'- -CCgUCGugGCuaCGGca-------------CGGCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 20468 0.72 0.369633
Target:  5'- uGGCgagcagAGCGCCGGUGCgCGUGCgCGauccccggaagaCUGGCc -3'
miRNA:   3'- -CCG------UCGUGGCUACG-GCACG-GC------------GACCG- -5'
5253 3' -60.2 NC_001798.1 + 21635 0.72 0.369633
Target:  5'- cGGguGCGUCGGUGCCccgcucGCCGCcGGCg -3'
miRNA:   3'- -CCguCGUGGCUACGGca----CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 22736 0.69 0.537661
Target:  5'- cGCAGgGCCGcgggGCCGagGUCGCgaUGGCg -3'
miRNA:   3'- cCGUCgUGGCua--CGGCa-CGGCG--ACCG- -5'
5253 3' -60.2 NC_001798.1 + 22938 0.8 0.134303
Target:  5'- cGCcGcCGCCGAUGCCGUGCCGaCgaGGCg -3'
miRNA:   3'- cCGuC-GUGGCUACGGCACGGC-Ga-CCG- -5'
5253 3' -60.2 NC_001798.1 + 22966 0.68 0.626218
Target:  5'- cGGCcccGGCGuCCGGggagGCCGUcgacgagccuGCCGCggacGGCg -3'
miRNA:   3'- -CCG---UCGU-GGCUa---CGGCA----------CGGCGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 23581 0.71 0.462784
Target:  5'- gGGCGGCGCCccgGCCGaGCCcGCccagGGCc -3'
miRNA:   3'- -CCGUCGUGGcuaCGGCaCGG-CGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 23636 0.67 0.675862
Target:  5'- cGCGGCgACCGcggGCCGccuggagcGCCGCcgGGCc -3'
miRNA:   3'- cCGUCG-UGGCua-CGGCa-------CGGCGa-CCG- -5'
5253 3' -60.2 NC_001798.1 + 24127 0.69 0.537661
Target:  5'- cGGCAGCgugGCgCGG-GCCGUGCCccacCUGGg -3'
miRNA:   3'- -CCGUCG---UG-GCUaCGGCACGGc---GACCg -5'
5253 3' -60.2 NC_001798.1 + 24417 0.67 0.655058
Target:  5'- cGGCGGCgucgccgGCCGAcgagcgcGCgGUGCCcGCcGGCu -3'
miRNA:   3'- -CCGUCG-------UGGCUa------CGgCACGG-CGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 24565 0.73 0.361823
Target:  5'- uGGCGGCgGCCGgcGCgCGgaggcggGCCGCgUGGCc -3'
miRNA:   3'- -CCGUCG-UGGCuaCG-GCa------CGGCG-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.