miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 3' -60.2 NC_001798.1 + 239 0.66 0.753092
Target:  5'- cGGCAGgACgGGgacuagcagGCUGUGCCGCa--- -3'
miRNA:   3'- -CCGUCgUGgCUa--------CGGCACGGCGaccg -5'
5253 3' -60.2 NC_001798.1 + 1279 0.69 0.547337
Target:  5'- cGCAGCACCagcgGggGCgCGUcGCCGUcgGGCu -3'
miRNA:   3'- cCGUCGUGG----CuaCG-GCA-CGGCGa-CCG- -5'
5253 3' -60.2 NC_001798.1 + 1351 0.66 0.724653
Target:  5'- cGCAGCuccGCCGG-GCC--GCCGCgcacGGCg -3'
miRNA:   3'- cCGUCG---UGGCUaCGGcaCGGCGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 1733 0.68 0.596422
Target:  5'- uGCGGCGCaGGUcCCGcGCCGCcGGCc -3'
miRNA:   3'- cCGUCGUGgCUAcGGCaCGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 1782 0.66 0.753092
Target:  5'- gGGCAGCACCucgcaggccaGGUaGgCGUGCUGCc-GCg -3'
miRNA:   3'- -CCGUCGUGG----------CUA-CgGCACGGCGacCG- -5'
5253 3' -60.2 NC_001798.1 + 2032 0.66 0.743702
Target:  5'- cGCAGaGCCGGuUGCCcaggGCCGCcagcaGGCa -3'
miRNA:   3'- cCGUCgUGGCU-ACGGca--CGGCGa----CCG- -5'
5253 3' -60.2 NC_001798.1 + 2230 0.66 0.715012
Target:  5'- aGGCGcGCAgCGG-GCCGaagGCgGCgGGCg -3'
miRNA:   3'- -CCGU-CGUgGCUaCGGCa--CGgCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 2404 0.72 0.410379
Target:  5'- gGGCGGCgGCCGAgggcGCCGgcgUGUgGCUGGg -3'
miRNA:   3'- -CCGUCG-UGGCUa---CGGC---ACGgCGACCg -5'
5253 3' -60.2 NC_001798.1 + 2494 0.72 0.402008
Target:  5'- gGGuCAGCGCCGcgggGCgCGgcgGCCGCggcGGCg -3'
miRNA:   3'- -CC-GUCGUGGCua--CG-GCa--CGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 2627 0.66 0.724653
Target:  5'- cGGCGGCGCCcugGCCGgGgCGg-GGCu -3'
miRNA:   3'- -CCGUCGUGGcuaCGGCaCgGCgaCCG- -5'
5253 3' -60.2 NC_001798.1 + 2708 0.67 0.68572
Target:  5'- cGCGGCGaCGGUGUCG-GCCaGCagggGGCg -3'
miRNA:   3'- cCGUCGUgGCUACGGCaCGG-CGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 2807 0.72 0.402008
Target:  5'- cGGCAGCGCCGG-GCCcaggGCC-CcGGCg -3'
miRNA:   3'- -CCGUCGUGGCUaCGGca--CGGcGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 2854 0.71 0.436128
Target:  5'- cGGCGGcCACgGcgGCCucgcUGCCGCcGGCc -3'
miRNA:   3'- -CCGUC-GUGgCuaCGGc---ACGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 2974 0.66 0.724653
Target:  5'- cGGCGuGCGgCGGggcgGCCG-GCCcGCgGGCc -3'
miRNA:   3'- -CCGU-CGUgGCUa---CGGCaCGG-CGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 3243 0.69 0.537661
Target:  5'- cGGCgAGCACCcccgcGgcGCCGUaGCCgGCgGGCa -3'
miRNA:   3'- -CCG-UCGUGG-----CuaCGGCA-CGG-CGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 3327 0.67 0.642137
Target:  5'- cGGCGGCGgCGGgcuucccgcgggcGUCGUcGCCGUcgUGGCg -3'
miRNA:   3'- -CCGUCGUgGCUa------------CGGCA-CGGCG--ACCG- -5'
5253 3' -60.2 NC_001798.1 + 3944 0.72 0.402008
Target:  5'- cGGUAGCGCgCGuagaaggcGCCGgagGCCGCgucGGCg -3'
miRNA:   3'- -CCGUCGUG-GCua------CGGCa--CGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 4018 0.68 0.616272
Target:  5'- cGGCccguGGCGUCGcgGCCGgccaccGCCGCgcgGGCc -3'
miRNA:   3'- -CCG----UCGUGGCuaCGGCa-----CGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 4069 0.67 0.695537
Target:  5'- aGGCGGC-CCGcgGUC--GCCGCgggGGUc -3'
miRNA:   3'- -CCGUCGuGGCuaCGGcaCGGCGa--CCG- -5'
5253 3' -60.2 NC_001798.1 + 4370 0.66 0.753092
Target:  5'- gGGC-GCGCCGGcgGCgGUGgUGgUGGUg -3'
miRNA:   3'- -CCGuCGUGGCUa-CGgCACgGCgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.