miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 3' -60.2 NC_001798.1 + 56693 1.14 0.000563
Target:  5'- cGGCAGCACCGAUGCCGUGCCGCUGGCg -3'
miRNA:   3'- -CCGUCGUGGCUACGGCACGGCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 22938 0.8 0.134303
Target:  5'- cGCcGcCGCCGAUGCCGUGCCGaCgaGGCg -3'
miRNA:   3'- cCGuC-GUGGCUACGGCACGGC-Ga-CCG- -5'
5253 3' -60.2 NC_001798.1 + 96352 0.79 0.137719
Target:  5'- cGGCGGCACCuGcgGCCGggGCUGgaGGCu -3'
miRNA:   3'- -CCGUCGUGG-CuaCGGCa-CGGCgaCCG- -5'
5253 3' -60.2 NC_001798.1 + 120469 0.78 0.17607
Target:  5'- cGCGGUACCucccgacgaccgcGAUGCCgGUGCCGgaGGCg -3'
miRNA:   3'- cCGUCGUGG-------------CUACGG-CACGGCgaCCG- -5'
5253 3' -60.2 NC_001798.1 + 77704 0.77 0.185344
Target:  5'- gGGCAGCAgCGAgcGCUGgGCCGCcGGCg -3'
miRNA:   3'- -CCGUCGUgGCUa-CGGCaCGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 36309 0.77 0.209171
Target:  5'- uGGCGGCggggcgcggGCCGggGCCGggGCuCGCUGGUc -3'
miRNA:   3'- -CCGUCG---------UGGCuaCGGCa-CG-GCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 150203 0.77 0.209171
Target:  5'- gGGCGGCACCGGgggUGuuGgUGCCGCgGGg -3'
miRNA:   3'- -CCGUCGUGGCU---ACggC-ACGGCGaCCg -5'
5253 3' -60.2 NC_001798.1 + 51923 0.76 0.21942
Target:  5'- uGCGGCccguggggGCCGccGCCGUGCCGCUGcucaGCg -3'
miRNA:   3'- cCGUCG--------UGGCuaCGGCACGGCGAC----CG- -5'
5253 3' -60.2 NC_001798.1 + 154284 0.76 0.230094
Target:  5'- cGCAGC-CCGG-GCCGUGuuGCgGGCc -3'
miRNA:   3'- cCGUCGuGGCUaCGGCACggCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 24844 0.76 0.235594
Target:  5'- cGGCGGCAgCGAggccGCCGUgGCCGCcGuGCg -3'
miRNA:   3'- -CCGUCGUgGCUa---CGGCA-CGGCGaC-CG- -5'
5253 3' -60.2 NC_001798.1 + 31671 0.75 0.252756
Target:  5'- gGGCccGCGCCGcccGCCGUGCCGgUGGa -3'
miRNA:   3'- -CCGu-CGUGGCua-CGGCACGGCgACCg -5'
5253 3' -60.2 NC_001798.1 + 121795 0.75 0.277224
Target:  5'- gGGCGGgGCCGG-GCCG-GCCGUUgucGGCa -3'
miRNA:   3'- -CCGUCgUGGCUaCGGCaCGGCGA---CCG- -5'
5253 3' -60.2 NC_001798.1 + 153041 0.75 0.277224
Target:  5'- cGGCGGCGCgCGGUugGCCGgcGCCGCccccuggGGCg -3'
miRNA:   3'- -CCGUCGUG-GCUA--CGGCa-CGGCGa------CCG- -5'
5253 3' -60.2 NC_001798.1 + 39552 0.74 0.283628
Target:  5'- gGGUGGCGCCGggGCCGUccGuCCGCgccgacgcggggUGGCg -3'
miRNA:   3'- -CCGUCGUGGCuaCGGCA--C-GGCG------------ACCG- -5'
5253 3' -60.2 NC_001798.1 + 117555 0.74 0.283628
Target:  5'- uGGCuGCGCCcaGGUGCCGcgGCgCGCcGGCa -3'
miRNA:   3'- -CCGuCGUGG--CUACGGCa-CG-GCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 134681 0.74 0.296788
Target:  5'- gGGUcacGGCGCgGGUGCUGcUGCCGCgcGGCu -3'
miRNA:   3'- -CCG---UCGUGgCUACGGC-ACGGCGa-CCG- -5'
5253 3' -60.2 NC_001798.1 + 35447 0.74 0.303544
Target:  5'- gGGCcgcuGGCGCCGcgGcCCGU-CUGCUGGCc -3'
miRNA:   3'- -CCG----UCGUGGCuaC-GGCAcGGCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 17984 0.74 0.315298
Target:  5'- gGGgGGCugCGcgGCCcggaacaggaggaugGCCGCUGGCu -3'
miRNA:   3'- -CCgUCGugGCuaCGGca-------------CGGCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 75282 0.74 0.317408
Target:  5'- cGCGGCGCgCGAUGCC--GCC-CUGGCc -3'
miRNA:   3'- cCGUCGUG-GCUACGGcaCGGcGACCG- -5'
5253 3' -60.2 NC_001798.1 + 91267 0.73 0.324517
Target:  5'- cGGCGGCAagGcgGCgGUGCCGuCUGGg -3'
miRNA:   3'- -CCGUCGUggCuaCGgCACGGC-GACCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.