miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 5' -54.6 NC_001798.1 + 27326 0.69 0.850263
Target:  5'- aGGGAGGGgGugGCGGGGaaccgugUGCGGgcggGCg -3'
miRNA:   3'- -CUCUCUUgCugUGCCUCa------GCGCCa---CG- -5'
5253 5' -54.6 NC_001798.1 + 27420 0.69 0.873055
Target:  5'- cGGGGGGGCGGggagcUugGGAGUgUGUGGUGg -3'
miRNA:   3'- -CUCUCUUGCU-----GugCCUCA-GCGCCACg -5'
5253 5' -54.6 NC_001798.1 + 27591 0.68 0.906682
Target:  5'- cGGGGGAGgGACGgggaaGGGGgcgCGCGGgGCu -3'
miRNA:   3'- -CUCUCUUgCUGUg----CCUCa--GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 30169 0.77 0.455303
Target:  5'- uGAGGGAGgGACACGGGGgacacggCGCGGggGUc -3'
miRNA:   3'- -CUCUCUUgCUGUGCCUCa------GCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 30932 0.71 0.75307
Target:  5'- -uGAGGGCGGCG-GGGGUCggGCGGgggGCg -3'
miRNA:   3'- cuCUCUUGCUGUgCCUCAG--CGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 31136 0.75 0.56168
Target:  5'- aAGAGcgcccCGGCGCGGGGgcgGCGGUGCg -3'
miRNA:   3'- cUCUCuu---GCUGUGCCUCag-CGCCACG- -5'
5253 5' -54.6 NC_001798.1 + 32550 0.69 0.83407
Target:  5'- cGGGGAACGugGCGGAccuGcUGCGGgccGCg -3'
miRNA:   3'- cUCUCUUGCugUGCCU---CaGCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 34967 0.66 0.952445
Target:  5'- gGAGGGGGCGGcCGCcGAGgUGCGGggGCc -3'
miRNA:   3'- -CUCUCUUGCU-GUGcCUCaGCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 35138 0.67 0.918514
Target:  5'- aGGAGAAgGGCGCGccGGUgCGCGGaGCa -3'
miRNA:   3'- cUCUCUUgCUGUGCc-UCA-GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 36069 0.66 0.948304
Target:  5'- cGGAGGcuGCgGGCGCGGGGUagGUGGguggGCg -3'
miRNA:   3'- cUCUCU--UG-CUGUGCCUCAg-CGCCa---CG- -5'
5253 5' -54.6 NC_001798.1 + 36276 0.67 0.939323
Target:  5'- -cGGGGugGGCgGCGGGGg-GgGGUGCc -3'
miRNA:   3'- cuCUCUugCUG-UGCCUCagCgCCACG- -5'
5253 5' -54.6 NC_001798.1 + 36419 0.69 0.865666
Target:  5'- cGGGcGGGGCGGugggGCGGGGUCGgGGUcGCg -3'
miRNA:   3'- -CUC-UCUUGCUg---UGCCUCAGCgCCA-CG- -5'
5253 5' -54.6 NC_001798.1 + 36518 0.66 0.943931
Target:  5'- cGGGGGcgcgcGGCGGCcggGCGGGGgcgCGCGGcgGCc -3'
miRNA:   3'- -CUCUC-----UUGCUG---UGCCUCa--GCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 36560 0.66 0.943931
Target:  5'- cGGGGGcgcgcGGCGGCcggGCGGGGgcgCGCGGcgGCc -3'
miRNA:   3'- -CUCUC-----UUGCUG---UGCCUCa--GCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 36602 0.66 0.943931
Target:  5'- cGGGGGcgcgcGGCGGCcggGCGGGGgcgCGCGGcgGCc -3'
miRNA:   3'- -CUCUC-----UUGCUG---UGCCUCa--GCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 36705 0.69 0.873055
Target:  5'- gGAGGGGAgGACGCGGGGgagcaaaauaaaUUGCGucugcaugcGUGCg -3'
miRNA:   3'- -CUCUCUUgCUGUGCCUC------------AGCGC---------CACG- -5'
5253 5' -54.6 NC_001798.1 + 39795 0.66 0.956357
Target:  5'- -cGAGGcGCGACcacacgcCGGuGGUCGCGGgugGCg -3'
miRNA:   3'- cuCUCU-UGCUGu------GCC-UCAGCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 42156 0.66 0.960044
Target:  5'- uGGAGGACGcggaucuccCGCGGGGcCGCGGa-- -3'
miRNA:   3'- cUCUCUUGCu--------GUGCCUCaGCGCCacg -5'
5253 5' -54.6 NC_001798.1 + 43961 0.67 0.912716
Target:  5'- uGAGGGuguCGGgGCGuGGGUCGUGGgggauUGCg -3'
miRNA:   3'- -CUCUCuu-GCUgUGC-CUCAGCGCC-----ACG- -5'
5253 5' -54.6 NC_001798.1 + 44954 0.67 0.917945
Target:  5'- -uGAGAugauucgggccGCGGCuccgcccucggagGCGGAGcCGCGGcUGCa -3'
miRNA:   3'- cuCUCU-----------UGCUG-------------UGCCUCaGCGCC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.