miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 5' -54.6 NC_001798.1 + 1536 0.69 0.865666
Target:  5'- cGGGAGcACGGCGCGGcGGUacucgCGCGGggacauggGCa -3'
miRNA:   3'- -CUCUCuUGCUGUGCC-UCA-----GCGCCa-------CG- -5'
5253 5' -54.6 NC_001798.1 + 2493 0.67 0.934478
Target:  5'- cGGGucAGCGcCGCGGGG-CGCGGcgGCc -3'
miRNA:   3'- -CUCucUUGCuGUGCCUCaGCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 2560 0.67 0.918514
Target:  5'- cGGGAGGgGCGGcCGCGGGG-CGgGGgGCg -3'
miRNA:   3'- -CUCUCU-UGCU-GUGCCUCaGCgCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 2673 0.67 0.934478
Target:  5'- -----cGCGGCGCGGAGgcgggCGCGGcgaGCg -3'
miRNA:   3'- cucucuUGCUGUGCCUCa----GCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 3201 0.67 0.912716
Target:  5'- ---cGGcCGGCGCGGAGgcgggCGCGGcGCu -3'
miRNA:   3'- cucuCUuGCUGUGCCUCa----GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 5272 0.67 0.934478
Target:  5'- aGGAGGAgGACGCGGAGga--GGaGCg -3'
miRNA:   3'- cUCUCUUgCUGUGCCUCagcgCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 9132 0.67 0.934478
Target:  5'- -cGAGGuggucuGCGGCACGcGGG-CGCGGcGCc -3'
miRNA:   3'- cuCUCU------UGCUGUGC-CUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 10289 0.68 0.893913
Target:  5'- cGGGGGGGCGACGgGGGGaCGaCGGg-- -3'
miRNA:   3'- -CUCUCUUGCUGUgCCUCaGC-GCCacg -5'
5253 5' -54.6 NC_001798.1 + 12711 0.74 0.571752
Target:  5'- -uGGGGGCGGCG-GGGG-CGUGGUGCg -3'
miRNA:   3'- cuCUCUUGCUGUgCCUCaGCGCCACG- -5'
5253 5' -54.6 NC_001798.1 + 13062 0.69 0.842262
Target:  5'- gGGGAGAGCGuACuugcaGGAGgCGCGG-GCc -3'
miRNA:   3'- -CUCUCUUGC-UGug---CCUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 15049 0.66 0.956357
Target:  5'- gGGGcGGAugGGCcCGGGGcgCGCGGgggGUg -3'
miRNA:   3'- -CUC-UCUugCUGuGCCUCa-GCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 15214 0.69 0.83407
Target:  5'- gGGGGGAGCGucCGCGG-GUCcGUgugGGUGCg -3'
miRNA:   3'- -CUCUCUUGCu-GUGCCuCAG-CG---CCACG- -5'
5253 5' -54.6 NC_001798.1 + 15281 0.68 0.900413
Target:  5'- cGGGuuccGGGCGugGCGGuGGUCGCGGc-- -3'
miRNA:   3'- -CUCu---CUUGCugUGCC-UCAGCGCCacg -5'
5253 5' -54.6 NC_001798.1 + 15423 0.67 0.912716
Target:  5'- cGGGAGGgguuguuuGgGGCccCGGAGUCGUGGgGCg -3'
miRNA:   3'- -CUCUCU--------UgCUGu-GCCUCAGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 15583 0.71 0.743419
Target:  5'- gGGGAGuggcGACGACuccACGGAugcaGUCGCGG-GCg -3'
miRNA:   3'- -CUCUC----UUGCUG---UGCCU----CAGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 16040 0.66 0.952445
Target:  5'- gGGGAGcaaaAGCGACGCGuGguaGGUCGCuGGggGCg -3'
miRNA:   3'- -CUCUC----UUGCUGUGC-C---UCAGCG-CCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 22727 0.66 0.952445
Target:  5'- -cGAcGACGACGCaGGGcCGCGGgGCc -3'
miRNA:   3'- cuCUcUUGCUGUGcCUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 23880 0.69 0.858066
Target:  5'- uGGGGGGcgccCGAgGCGGAGgaggCGCGG-GCc -3'
miRNA:   3'- -CUCUCUu---GCUgUGCCUCa---GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 27137 0.73 0.629775
Target:  5'- gGAGGGAA-GGCACGGGG-CGCGGgagggaggggcugcUGCg -3'
miRNA:   3'- -CUCUCUUgCUGUGCCUCaGCGCC--------------ACG- -5'
5253 5' -54.6 NC_001798.1 + 27207 0.69 0.842262
Target:  5'- cGGGGGAAgccccCGGgGCGGGG-CGCGGgggagGCg -3'
miRNA:   3'- -CUCUCUU-----GCUgUGCCUCaGCGCCa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.