miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 5' -54.6 NC_001798.1 + 56727 1.11 0.003262
Target:  5'- cGAGAGAACGACACGGAGUCGCGGUGCc -3'
miRNA:   3'- -CUCUCUUGCUGUGCCUCAGCGCCACG- -5'
5253 5' -54.6 NC_001798.1 + 150557 0.77 0.437112
Target:  5'- aGGAGAGCGGCcCGGGGccCGCGGgGCg -3'
miRNA:   3'- cUCUCUUGCUGuGCCUCa-GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 30169 0.77 0.455303
Target:  5'- uGAGGGAGgGACACGGGGgacacggCGCGGggGUc -3'
miRNA:   3'- -CUCUCUUgCUGUGCCUCa------GCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 122053 0.76 0.491905
Target:  5'- cGGGGGAGCccugggcgcgucgGACGCGGAG--GCGGUGCu -3'
miRNA:   3'- -CUCUCUUG-------------CUGUGCCUCagCGCCACG- -5'
5253 5' -54.6 NC_001798.1 + 98929 0.76 0.512168
Target:  5'- gGGGcAGAACuACACGGAGggcaUCGCGGUGg -3'
miRNA:   3'- -CUC-UCUUGcUGUGCCUC----AGCGCCACg -5'
5253 5' -54.6 NC_001798.1 + 31136 0.75 0.56168
Target:  5'- aAGAGcgcccCGGCGCGGGGgcgGCGGUGCg -3'
miRNA:   3'- cUCUCuu---GCUGUGCCUCag-CGCCACG- -5'
5253 5' -54.6 NC_001798.1 + 12711 0.74 0.571752
Target:  5'- -uGGGGGCGGCG-GGGG-CGUGGUGCg -3'
miRNA:   3'- cuCUCUUGCUGUgCCUCaGCGCCACG- -5'
5253 5' -54.6 NC_001798.1 + 27137 0.73 0.629775
Target:  5'- gGAGGGAA-GGCACGGGG-CGCGGgagggaggggcugcUGCg -3'
miRNA:   3'- -CUCUCUUgCUGUGCCUCaGCGCC--------------ACG- -5'
5253 5' -54.6 NC_001798.1 + 148431 0.73 0.663479
Target:  5'- cGGGGGugGGCACGGGcGUaagUGCgGGUGCa -3'
miRNA:   3'- cUCUCUugCUGUGCCU-CA---GCG-CCACG- -5'
5253 5' -54.6 NC_001798.1 + 150331 0.72 0.683792
Target:  5'- uGGGucauGcGCGAC-CGGGGcgCGCGGUGCg -3'
miRNA:   3'- -CUCu---CuUGCUGuGCCUCa-GCGCCACG- -5'
5253 5' -54.6 NC_001798.1 + 15583 0.71 0.743419
Target:  5'- gGGGAGuggcGACGACuccACGGAugcaGUCGCGG-GCg -3'
miRNA:   3'- -CUCUC----UUGCUG---UGCCU----CAGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 30932 0.71 0.75307
Target:  5'- -uGAGGGCGGCG-GGGGUCggGCGGgggGCg -3'
miRNA:   3'- cuCUCUUGCUGUgCCUCAG--CGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 56175 0.71 0.772045
Target:  5'- cGGGGGACGGCGgGGGGguggggUGgGGUGUg -3'
miRNA:   3'- cUCUCUUGCUGUgCCUCa-----GCgCCACG- -5'
5253 5' -54.6 NC_001798.1 + 150199 0.71 0.772045
Target:  5'- uGGGGGGCGGCAcCGGGGgUGuUGGUGCc -3'
miRNA:   3'- cUCUCUUGCUGU-GCCUCaGC-GCCACG- -5'
5253 5' -54.6 NC_001798.1 + 105391 0.7 0.796857
Target:  5'- uGGAGGGCGGCGuucuccagggccgcCGcGGcCGCGGUGCg -3'
miRNA:   3'- cUCUCUUGCUGU--------------GCcUCaGCGCCACG- -5'
5253 5' -54.6 NC_001798.1 + 107464 0.7 0.808427
Target:  5'- -cGAGGACGGCGCGGGGUCucuGCcccGCa -3'
miRNA:   3'- cuCUCUUGCUGUGCCUCAG---CGccaCG- -5'
5253 5' -54.6 NC_001798.1 + 104520 0.7 0.817145
Target:  5'- -cGGcGGCGGCGCGGuugacgucGUCGCGGUGg -3'
miRNA:   3'- cuCUcUUGCUGUGCCu-------CAGCGCCACg -5'
5253 5' -54.6 NC_001798.1 + 150456 0.7 0.817145
Target:  5'- cGGGGcGACGGCcgcGCGGGGgcgCGCGGcGCg -3'
miRNA:   3'- cUCUC-UUGCUG---UGCCUCa--GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 124575 0.69 0.83407
Target:  5'- gGGGAGGGCGGCAcCGGGGaaacaggcacCGCGGgaggaagGCg -3'
miRNA:   3'- -CUCUCUUGCUGU-GCCUCa---------GCGCCa------CG- -5'
5253 5' -54.6 NC_001798.1 + 15214 0.69 0.83407
Target:  5'- gGGGGGAGCGucCGCGG-GUCcGUgugGGUGCg -3'
miRNA:   3'- -CUCUCUUGCu-GUGCCuCAG-CG---CCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.