miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5255 3' -54.4 NC_001798.1 + 56268 1.13 0.002374
Target:  5'- aGUUACCGCAGCCGACGAUAGCGCACCg -3'
miRNA:   3'- -CAAUGGCGUCGGCUGCUAUCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 137188 0.88 0.105009
Target:  5'- --aACCGCGGCUGGCGAUcgcugaccuGGCGCACCu -3'
miRNA:   3'- caaUGGCGUCGGCUGCUA---------UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 137995 0.82 0.226942
Target:  5'- --cGCCGCAGCUcGCGGUcGCGCGCCu -3'
miRNA:   3'- caaUGGCGUCGGcUGCUAuCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 35533 0.81 0.244218
Target:  5'- --cGCCGCGGCCGGCGcggGGCGUugCc -3'
miRNA:   3'- caaUGGCGUCGGCUGCua-UCGCGugG- -5'
5255 3' -54.4 NC_001798.1 + 3261 0.81 0.256333
Target:  5'- --cGCCGUAGCCGGCGGgcaccGCGCGCUc -3'
miRNA:   3'- caaUGGCGUCGGCUGCUau---CGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 100179 0.81 0.256333
Target:  5'- --cACCGuCGGCCGGCGGgugAGCGCGCg -3'
miRNA:   3'- caaUGGC-GUCGGCUGCUa--UCGCGUGg -5'
5255 3' -54.4 NC_001798.1 + 4353 0.8 0.309736
Target:  5'- --gGCCGagcGCCGGCGGggGGCGCGCCg -3'
miRNA:   3'- caaUGGCgu-CGGCUGCUa-UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 39536 0.79 0.316977
Target:  5'- --cGCCGCGccucGCCGugGGUGGCGCcgggGCCg -3'
miRNA:   3'- caaUGGCGU----CGGCugCUAUCGCG----UGG- -5'
5255 3' -54.4 NC_001798.1 + 31332 0.79 0.331841
Target:  5'- ---cCUGCGGCCGGCGGggGGCGCGCg -3'
miRNA:   3'- caauGGCGUCGGCUGCUa-UCGCGUGg -5'
5255 3' -54.4 NC_001798.1 + 62280 0.79 0.331841
Target:  5'- --cGCCggGCGGcCCGGCGggAGCGCGCCa -3'
miRNA:   3'- caaUGG--CGUC-GGCUGCuaUCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 121633 0.79 0.331841
Target:  5'- ----aCGCGGCCGACGGc-GCGCGCCu -3'
miRNA:   3'- caaugGCGUCGGCUGCUauCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 149254 0.79 0.34721
Target:  5'- ---gUCGcCGGCCGGCGcgGGCGCGCCc -3'
miRNA:   3'- caauGGC-GUCGGCUGCuaUCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 153693 0.78 0.363082
Target:  5'- gGggGCCGCcGCCGGCGcaggcucaGGCGCGCCa -3'
miRNA:   3'- -CaaUGGCGuCGGCUGCua------UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 71093 0.78 0.387818
Target:  5'- ---cCCGCGGUCGGCGu--GCGCGCCc -3'
miRNA:   3'- caauGGCGUCGGCUGCuauCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 24741 0.78 0.394598
Target:  5'- --cGCCGCAcGCCGACGcgccccgccuGCGCGCCu -3'
miRNA:   3'- caaUGGCGU-CGGCUGCuau-------CGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 104759 0.78 0.396305
Target:  5'- aUUACCGCGGCCaGACGcgccagGUAGCGCggaggcggGCCa -3'
miRNA:   3'- cAAUGGCGUCGG-CUGC------UAUCGCG--------UGG- -5'
5255 3' -54.4 NC_001798.1 + 1225 0.77 0.413635
Target:  5'- ---cCCGCGGCCGACGcccAGCGUAUCu -3'
miRNA:   3'- caauGGCGUCGGCUGCua-UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 24859 0.77 0.422474
Target:  5'- --cGCCGUGGCCGcCGu--GCGCGCCg -3'
miRNA:   3'- caaUGGCGUCGGCuGCuauCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 153445 0.76 0.456133
Target:  5'- --gGCgCGCGGCCGucucccaggccaccaGAUGGCGCACCu -3'
miRNA:   3'- caaUG-GCGUCGGCug-------------CUAUCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 28061 0.76 0.458925
Target:  5'- --aACCGCGGUCGAg---AGCGCGCCg -3'
miRNA:   3'- caaUGGCGUCGGCUgcuaUCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.