miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5255 3' -54.4 NC_001798.1 + 1225 0.77 0.413635
Target:  5'- ---cCCGCGGCCGACGcccAGCGUAUCu -3'
miRNA:   3'- caauGGCGUCGGCUGCua-UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 1432 0.67 0.928753
Target:  5'- --cGCgCGCAGgCG-CGGUgcgAGUGCGCCu -3'
miRNA:   3'- caaUG-GCGUCgGCuGCUA---UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 1749 0.7 0.796941
Target:  5'- --cGCCGcCGGCCaGCGcacGGCGCACUg -3'
miRNA:   3'- caaUGGC-GUCGGcUGCua-UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 2002 0.69 0.863278
Target:  5'- aGUUGCCcgcccagGCGGCCGugGcgGGCcCGCa -3'
miRNA:   3'- -CAAUGG-------CGUCGGCugCuaUCGcGUGg -5'
5255 3' -54.4 NC_001798.1 + 2204 0.66 0.952136
Target:  5'- --gGCCGCcGCgCGGCGc-AGCGgGCCc -3'
miRNA:   3'- caaUGGCGuCG-GCUGCuaUCGCgUGG- -5'
5255 3' -54.4 NC_001798.1 + 2231 0.71 0.73018
Target:  5'- --gGCgCGCAGCgggccgaaGGCGGcgGGCGCGCCg -3'
miRNA:   3'- caaUG-GCGUCGg-------CUGCUa-UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 2284 0.71 0.73018
Target:  5'- --aGCgCGCGGCCaGCGAggccAGCGCGCg -3'
miRNA:   3'- caaUG-GCGUCGGcUGCUa---UCGCGUGg -5'
5255 3' -54.4 NC_001798.1 + 2517 0.68 0.878829
Target:  5'- --gGCCGCGGCggcggcguCGGCGGggcggggGGCGCgGCCc -3'
miRNA:   3'- caaUGGCGUCG--------GCUGCUa------UCGCG-UGG- -5'
5255 3' -54.4 NC_001798.1 + 2705 0.68 0.890699
Target:  5'- --gGCCGCGG-CGACGGUgucggccagcagggGGCGCAg- -3'
miRNA:   3'- caaUGGCGUCgGCUGCUA--------------UCGCGUgg -5'
5255 3' -54.4 NC_001798.1 + 2934 0.69 0.84028
Target:  5'- --aACCGCAGCUcGCGcagccaGGCGCGCa -3'
miRNA:   3'- caaUGGCGUCGGcUGCua----UCGCGUGg -5'
5255 3' -54.4 NC_001798.1 + 3196 0.68 0.905693
Target:  5'- --gGCCcCGGCCGGCGcggaggcgGGCGCGgCg -3'
miRNA:   3'- caaUGGcGUCGGCUGCua------UCGCGUgG- -5'
5255 3' -54.4 NC_001798.1 + 3261 0.81 0.256333
Target:  5'- --cGCCGUAGCCGGCGGgcaccGCGCGCUc -3'
miRNA:   3'- caaUGGCGUCGGCUGCUau---CGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 3301 0.68 0.885891
Target:  5'- --cGCCGCcGCCGACGGcaacggGGCgGCGgCg -3'
miRNA:   3'- caaUGGCGuCGGCUGCUa-----UCG-CGUgG- -5'
5255 3' -54.4 NC_001798.1 + 3531 0.68 0.892725
Target:  5'- --gGCCcCAGCCGaaGCGGcccgccgccaUGGCGUACCc -3'
miRNA:   3'- caaUGGcGUCGGC--UGCU----------AUCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 3721 0.66 0.938827
Target:  5'- -gUACaGCAGCCG-CGugaucagGGCGUACUg -3'
miRNA:   3'- caAUGgCGUCGGCuGCua-----UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 4353 0.8 0.309736
Target:  5'- --gGCCGagcGCCGGCGGggGGCGCGCCg -3'
miRNA:   3'- caaUGGCgu-CGGCUGCUa-UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 5182 0.66 0.943502
Target:  5'- ---cUgGCGGCCGcguCGGUAGCcGCGCUc -3'
miRNA:   3'- caauGgCGUCGGCu--GCUAUCG-CGUGG- -5'
5255 3' -54.4 NC_001798.1 + 8804 0.66 0.947937
Target:  5'- --gGCCGCGGgguaaagcggcaCCGACGcgcUGGaaCGCACCg -3'
miRNA:   3'- caaUGGCGUC------------GGCUGCu--AUC--GCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 9040 0.66 0.947937
Target:  5'- ---cCCGCAGCCaGCGcacGGCGaGCCa -3'
miRNA:   3'- caauGGCGUCGGcUGCua-UCGCgUGG- -5'
5255 3' -54.4 NC_001798.1 + 10116 0.67 0.933911
Target:  5'- --aACCGCAuCCaGACGAcguccaUGGCGUACg -3'
miRNA:   3'- caaUGGCGUcGG-CUGCU------AUCGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.