miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5255 5' -59.8 NC_001798.1 + 56308 1.08 0.001615
Target:  5'- uGAGGUACACUACCGCGGUCCCGGCCAg -3'
miRNA:   3'- -CUCCAUGUGAUGGCGCCAGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 24903 0.75 0.260773
Target:  5'- uGGGcccgGCGCUGCCGCGGagCCCGcGCCu -3'
miRNA:   3'- cUCCa---UGUGAUGGCGCCa-GGGC-CGGu -5'
5255 5' -59.8 NC_001798.1 + 111205 0.75 0.273111
Target:  5'- uGAGGaGCuGCUcgGCCaCGGUCCCGGCCGc -3'
miRNA:   3'- -CUCCaUG-UGA--UGGcGCCAGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 27922 0.74 0.299183
Target:  5'- cGGGGUcccCGCcGCCGgGGUCCCGGCg- -3'
miRNA:   3'- -CUCCAu--GUGaUGGCgCCAGGGCCGgu -5'
5255 5' -59.8 NC_001798.1 + 108562 0.73 0.380593
Target:  5'- ----cGCGCUGuuGCGGUCCCgGGCCu -3'
miRNA:   3'- cuccaUGUGAUggCGCCAGGG-CCGGu -5'
5255 5' -59.8 NC_001798.1 + 62332 0.72 0.396902
Target:  5'- ---cUACGCUgACCGCGGcCCCGGUCGg -3'
miRNA:   3'- cuccAUGUGA-UGGCGCCaGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 138736 0.72 0.405223
Target:  5'- -cGGcGCGCU-CCGCGGcCCCGGCg- -3'
miRNA:   3'- cuCCaUGUGAuGGCGCCaGGGCCGgu -5'
5255 5' -59.8 NC_001798.1 + 128250 0.71 0.448422
Target:  5'- gGAGGcggccgGCAUgguggACCGCGGgCUCGGCCGg -3'
miRNA:   3'- -CUCCa-----UGUGa----UGGCGCCaGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 66023 0.71 0.466403
Target:  5'- cAGGgcgaugugGCGCaUGCCGCGGgucgCCCGGCa- -3'
miRNA:   3'- cUCCa-------UGUG-AUGGCGCCa---GGGCCGgu -5'
5255 5' -59.8 NC_001798.1 + 71874 0.71 0.488461
Target:  5'- -cGGUuCACcugGCCGCGGccaccaagauccgcuUCCCGGCCc -3'
miRNA:   3'- cuCCAuGUGa--UGGCGCC---------------AGGGCCGGu -5'
5255 5' -59.8 NC_001798.1 + 100844 0.7 0.503434
Target:  5'- -cGGgGCGCUugccgugggGCUGCuGGUCCUGGCCGg -3'
miRNA:   3'- cuCCaUGUGA---------UGGCG-CCAGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 73951 0.7 0.522425
Target:  5'- gGGGGgcgaguggACGCgcgcgGCCGCGGgcUCCgGGCCGc -3'
miRNA:   3'- -CUCCa-------UGUGa----UGGCGCC--AGGgCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 111746 0.7 0.532024
Target:  5'- ----cGCGCccccgGCCcCGGUCCCGGCCAu -3'
miRNA:   3'- cuccaUGUGa----UGGcGCCAGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 150355 0.7 0.545567
Target:  5'- -cGGUGCGCguccACCggcacggcgggcggcGCGGgCCCGGCCGc -3'
miRNA:   3'- cuCCAUGUGa---UGG---------------CGCCaGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 131571 0.69 0.561177
Target:  5'- -cGGUGCGuaACUGUGGUCCgCGcGCCAa -3'
miRNA:   3'- cuCCAUGUgaUGGCGCCAGG-GC-CGGU- -5'
5255 5' -59.8 NC_001798.1 + 96337 0.69 0.561177
Target:  5'- cAGGUGCGCgUGCUGCGGcggcaCCugCGGCCGg -3'
miRNA:   3'- cUCCAUGUG-AUGGCGCCa----GG--GCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 14795 0.69 0.561177
Target:  5'- cGGGUGCGCguaucGCCuGCGccccgCCCGGCCGc -3'
miRNA:   3'- cUCCAUGUGa----UGG-CGCca---GGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 79265 0.69 0.561177
Target:  5'- gGAGuucgACGCggcgGCCGCGGaCCUGGCCc -3'
miRNA:   3'- -CUCca--UGUGa---UGGCGCCaGGGCCGGu -5'
5255 5' -59.8 NC_001798.1 + 115521 0.69 0.570997
Target:  5'- gGGGcGUACG---UCGCGGcCCCGGCCGg -3'
miRNA:   3'- -CUC-CAUGUgauGGCGCCaGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 92260 0.69 0.580856
Target:  5'- uGGGGUACGUguaugGCCGCGccugUCCGGCCGa -3'
miRNA:   3'- -CUCCAUGUGa----UGGCGCca--GGGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.