Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5255 | 5' | -59.8 | NC_001798.1 | + | 439 | 0.66 | 0.748035 |
Target: 5'- ----cGCGCgccacgggGCUGCGGUCCCgcGGCCGc -3' miRNA: 3'- cuccaUGUGa-------UGGCGCCAGGG--CCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 3013 | 0.66 | 0.766658 |
Target: 5'- cGGGG-GCGCggcggGCCG-GGcUCCGGCCAg -3' miRNA: 3'- -CUCCaUGUGa----UGGCgCCaGGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 4079 | 0.66 | 0.748035 |
Target: 5'- -cGGU-CGCcGCgGgGGUCCgGGCCGg -3' miRNA: 3'- cuCCAuGUGaUGgCgCCAGGgCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 4452 | 0.66 | 0.729026 |
Target: 5'- cGGGUACGCcccgcggACCGCGGacgucgUCuCCGGuCCGc -3' miRNA: 3'- cUCCAUGUGa------UGGCGCC------AG-GGCC-GGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 6213 | 0.67 | 0.68026 |
Target: 5'- cAGGUACGgUGacCCGgGGggCCGGCCGg -3' miRNA: 3'- cUCCAUGUgAU--GGCgCCagGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 9740 | 0.67 | 0.719398 |
Target: 5'- gGAGGUGCugUuccaccACCGC-GUUCCGGUa- -3' miRNA: 3'- -CUCCAUGugA------UGGCGcCAGGGCCGgu -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 12393 | 0.67 | 0.709699 |
Target: 5'- -cGGUGCGCgccCCaCGcUCCCGGCCu -3' miRNA: 3'- cuCCAUGUGau-GGcGCcAGGGCCGGu -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 14795 | 0.69 | 0.561177 |
Target: 5'- cGGGUGCGCguaucGCCuGCGccccgCCCGGCCGc -3' miRNA: 3'- cUCCAUGUGa----UGG-CGCca---GGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 23558 | 0.67 | 0.68026 |
Target: 5'- gGGGGUGCccGCgaggGCCccggggGCGGcgcCCCGGCCGa -3' miRNA: 3'- -CUCCAUG--UGa---UGG------CGCCa--GGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 24588 | 0.68 | 0.630549 |
Target: 5'- -cGGgcCGCgugGCCGUGGagugCCUGGCCGc -3' miRNA: 3'- cuCCauGUGa--UGGCGCCa---GGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 24903 | 0.75 | 0.260773 |
Target: 5'- uGGGcccgGCGCUGCCGCGGagCCCGcGCCu -3' miRNA: 3'- cUCCa---UGUGAUGGCGCCa-GGGC-CGGu -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 26540 | 0.68 | 0.640519 |
Target: 5'- gGAGGUgguggGgACcGCCGCGGggCUGGCCAc -3' miRNA: 3'- -CUCCA-----UgUGaUGGCGCCagGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 27287 | 0.66 | 0.757399 |
Target: 5'- gGGGGgagGgGCUGCCGCGaG-CUCGGCgGg -3' miRNA: 3'- -CUCCa--UgUGAUGGCGC-CaGGGCCGgU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 27922 | 0.74 | 0.299183 |
Target: 5'- cGGGGUcccCGCcGCCGgGGUCCCGGCg- -3' miRNA: 3'- -CUCCAu--GUGaUGGCgCCAGGGCCGgu -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 28048 | 0.66 | 0.748035 |
Target: 5'- --cGUACgACUcgggaACCGCGGUCgagagcgcgCCGGCCGc -3' miRNA: 3'- cucCAUG-UGA-----UGGCGCCAG---------GGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 28806 | 0.69 | 0.580856 |
Target: 5'- cGGGUccucCGCcGCCGCGGgCCCgGGCCGu -3' miRNA: 3'- cUCCAu---GUGaUGGCGCCaGGG-CCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 29072 | 0.66 | 0.748035 |
Target: 5'- -uGGUAauuagaaACUuuuaAUagGCGGUCCCGGCCGc -3' miRNA: 3'- cuCCAUg------UGA----UGg-CGCCAGGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 31693 | 0.67 | 0.719398 |
Target: 5'- -cGGUGgACgcgcACCGCGcGcCCCGGUCGc -3' miRNA: 3'- cuCCAUgUGa---UGGCGC-CaGGGCCGGU- -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 33940 | 0.66 | 0.748035 |
Target: 5'- --cGUGC-CUACCuuucccuaGCGGcCCCGGCCc -3' miRNA: 3'- cucCAUGuGAUGG--------CGCCaGGGCCGGu -5' |
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5255 | 5' | -59.8 | NC_001798.1 | + | 34816 | 0.66 | 0.766658 |
Target: 5'- cGGGGcccccGCGCUccGCCGgGGgCCCgGGCCGg -3' miRNA: 3'- -CUCCa----UGUGA--UGGCgCCaGGG-CCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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