miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 3' -53.4 NC_001798.1 + 92402 0.67 0.963347
Target:  5'- -gGCCGcGGuCGucGGGUcccgcACGACGGGCCUu -3'
miRNA:   3'- gaCGGC-CCuGU--UCUA-----UGUUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 36480 0.67 0.963347
Target:  5'- -cGCCGGGAgGGGGcgcCGGCGcGACgCg -3'
miRNA:   3'- gaCGGCCCUgUUCUau-GUUGC-CUGgG- -5'
5259 3' -53.4 NC_001798.1 + 150367 0.67 0.963347
Target:  5'- --aCCGGcacGGCGGGcgGC-GCGGGCCCg -3'
miRNA:   3'- gacGGCC---CUGUUCuaUGuUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 93732 0.67 0.963347
Target:  5'- cCUGCgCGcacacGACGcuGAUGCGgcuGCGGGCCCg -3'
miRNA:   3'- -GACG-GCc----CUGUu-CUAUGU---UGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 11246 0.67 0.959837
Target:  5'- aCUGCgGGGcCGAGGacUGACGGACa- -3'
miRNA:   3'- -GACGgCCCuGUUCUauGUUGCCUGgg -5'
5259 3' -53.4 NC_001798.1 + 83784 0.67 0.959837
Target:  5'- -cGCCGGGGgGcccGGAcGCG--GGGCCCg -3'
miRNA:   3'- gaCGGCCCUgU---UCUaUGUugCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 91469 0.67 0.959837
Target:  5'- -aGCuCGGGGUggGAUG--GCGGugCCg -3'
miRNA:   3'- gaCG-GCCCUGuuCUAUguUGCCugGG- -5'
5259 3' -53.4 NC_001798.1 + 110342 0.67 0.959837
Target:  5'- gCUGCUGguGGACAcGGAUgccacccaacaGCAGCuGGCCCa -3'
miRNA:   3'- -GACGGC--CCUGU-UCUA-----------UGUUGcCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 6059 0.67 0.959837
Target:  5'- -cGCCGGcGGCGAGcgggGCAccgACGcACCCg -3'
miRNA:   3'- gaCGGCC-CUGUUCua--UGU---UGCcUGGG- -5'
5259 3' -53.4 NC_001798.1 + 55023 0.67 0.959837
Target:  5'- cCUGCCGGGA---GAcGCccCGGACUCc -3'
miRNA:   3'- -GACGGCCCUguuCUaUGuuGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 97662 0.67 0.959837
Target:  5'- -cGCCGGcGGCu--GUACG-CGGACCg -3'
miRNA:   3'- gaCGGCC-CUGuucUAUGUuGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 146491 0.67 0.959837
Target:  5'- -gGCCGGGcCGGGccgGCAACGc-CCCg -3'
miRNA:   3'- gaCGGCCCuGUUCua-UGUUGCcuGGG- -5'
5259 3' -53.4 NC_001798.1 + 23831 0.67 0.959837
Target:  5'- --cCCGGGGCGcGugcuGUACGGCGGGCUg -3'
miRNA:   3'- gacGGCCCUGUuC----UAUGUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 93358 0.67 0.959837
Target:  5'- cCUGaCCGagguGGACGAcgccGGgcCGGCGGACCCc -3'
miRNA:   3'- -GAC-GGC----CCUGUU----CUauGUUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 44403 0.67 0.956101
Target:  5'- -gGCCGGGAgCAaugGGGUcCcGCGG-CCCa -3'
miRNA:   3'- gaCGGCCCU-GU---UCUAuGuUGCCuGGG- -5'
5259 3' -53.4 NC_001798.1 + 96030 0.67 0.956101
Target:  5'- -cGgCGGGGCGGGcgggcggGCGACGGGCa- -3'
miRNA:   3'- gaCgGCCCUGUUCua-----UGUUGCCUGgg -5'
5259 3' -53.4 NC_001798.1 + 39999 0.67 0.956101
Target:  5'- gCUGUCGGacuCGGGGUcgucGCGGCGG-CCCu -3'
miRNA:   3'- -GACGGCCcu-GUUCUA----UGUUGCCuGGG- -5'
5259 3' -53.4 NC_001798.1 + 45993 0.67 0.956101
Target:  5'- uUGUCGGGGgggaucCAGGGgaggGCGugGGuCCCc -3'
miRNA:   3'- gACGGCCCU------GUUCUa---UGUugCCuGGG- -5'
5259 3' -53.4 NC_001798.1 + 69158 0.67 0.956101
Target:  5'- uCUGCCGgccGGGC-GGAgcccgAUGGCGGGCCa -3'
miRNA:   3'- -GACGGC---CCUGuUCUa----UGUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 22269 0.67 0.952136
Target:  5'- -cGCCGGGcgcuaAUGAGAUGCcgcGCGGGCg- -3'
miRNA:   3'- gaCGGCCC-----UGUUCUAUGu--UGCCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.