miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 3' -53.4 NC_001798.1 + 54411 1.13 0.003141
Target:  5'- gCUGCCGGGACAAGAUACAACGGACCCg -3'
miRNA:   3'- -GACGGCCCUGUUCUAUGUUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 91262 0.83 0.250215
Target:  5'- uCUGCCGGcGGCAAG--GCGGCGGugCCg -3'
miRNA:   3'- -GACGGCC-CUGUUCuaUGUUGCCugGG- -5'
5259 3' -53.4 NC_001798.1 + 41463 0.82 0.295632
Target:  5'- -cGCCGGGGgGGGcgGuCGGCGGGCCCa -3'
miRNA:   3'- gaCGGCCCUgUUCuaU-GUUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 149443 0.77 0.496986
Target:  5'- gUGCuCGGGgaGCAGGGUGCGGCGGcUCCa -3'
miRNA:   3'- gACG-GCCC--UGUUCUAUGUUGCCuGGG- -5'
5259 3' -53.4 NC_001798.1 + 25578 0.76 0.526438
Target:  5'- gCUGCCGGG-CGAGGaccugGCcGCGGGCCg -3'
miRNA:   3'- -GACGGCCCuGUUCUa----UGuUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 108091 0.76 0.526438
Target:  5'- -aGCCGGGACGAcg-ACcAUGGGCCCc -3'
miRNA:   3'- gaCGGCCCUGUUcuaUGuUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 41876 0.76 0.536403
Target:  5'- -gGCCGGGGaucAGcUGCAGCaGGACCCa -3'
miRNA:   3'- gaCGGCCCUgu-UCuAUGUUG-CCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 13042 0.76 0.545427
Target:  5'- gCUGCCGGGgggaugcGCAGGGggagagcguacuUGCAggaggcGCGGGCCCg -3'
miRNA:   3'- -GACGGCCC-------UGUUCU------------AUGU------UGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 72442 0.76 0.546433
Target:  5'- gUGCCGGuuCGAGA-GCGACGGGCaCCg -3'
miRNA:   3'- gACGGCCcuGUUCUaUGUUGCCUG-GG- -5'
5259 3' -53.4 NC_001798.1 + 63715 0.76 0.566663
Target:  5'- -gGCCGGGugGuuGAUGguGCGGGCCa -3'
miRNA:   3'- gaCGGCCCugUu-CUAUguUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 79506 0.76 0.576851
Target:  5'- -cGCCGGGGCGAGGcguaucUGCGcgccgGCGGAgaCCCg -3'
miRNA:   3'- gaCGGCCCUGUUCU------AUGU-----UGCCU--GGG- -5'
5259 3' -53.4 NC_001798.1 + 150000 0.75 0.58708
Target:  5'- -cGCCGGGGCGAGcgGCccguggccGCGGucGCCCg -3'
miRNA:   3'- gaCGGCCCUGUUCuaUGu-------UGCC--UGGG- -5'
5259 3' -53.4 NC_001798.1 + 51263 0.75 0.597341
Target:  5'- -cGCCGGGACAGcgccauCAcGCGGGCCCc -3'
miRNA:   3'- gaCGGCCCUGUUcuau--GU-UGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 8787 0.75 0.628252
Target:  5'- uCUGCCGGGACGggcgaggccgcgGGGUAaAGCGGcACCg -3'
miRNA:   3'- -GACGGCCCUGU------------UCUAUgUUGCC-UGGg -5'
5259 3' -53.4 NC_001798.1 + 4098 0.75 0.628252
Target:  5'- -gGCCGGGGCGGGcucgGCccugGGCGGGCUCg -3'
miRNA:   3'- gaCGGCCCUGUUCua--UG----UUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 75125 0.74 0.638573
Target:  5'- -aGuCCGGG-CAGGGcggcggcgACGACGGGCCCg -3'
miRNA:   3'- gaC-GGCCCuGUUCUa-------UGUUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 152294 0.74 0.659189
Target:  5'- -aGCCGGGGUAGGGUagacucgagACGGCGG-CCCg -3'
miRNA:   3'- gaCGGCCCUGUUCUA---------UGUUGCCuGGG- -5'
5259 3' -53.4 NC_001798.1 + 16633 0.74 0.66536
Target:  5'- -cGCCGGGGCAGGucuugccgcccgGCGuccGCGGaACCCa -3'
miRNA:   3'- gaCGGCCCUGUUCua----------UGU---UGCC-UGGG- -5'
5259 3' -53.4 NC_001798.1 + 148423 0.74 0.669469
Target:  5'- -cGCCGGGGCGGGGguggGC-ACGGGCg- -3'
miRNA:   3'- gaCGGCCCUGUUCUa---UGuUGCCUGgg -5'
5259 3' -53.4 NC_001798.1 + 56535 0.74 0.673572
Target:  5'- gUGCCGGGGCGcccgcacgaugucugGGAcGCGACGGccACCUu -3'
miRNA:   3'- gACGGCCCUGU---------------UCUaUGUUGCC--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.