miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 3' -53.4 NC_001798.1 + 1533 0.71 0.831965
Target:  5'- -cGCCGGGAgCAcGGcGCGGCGGuACUCg -3'
miRNA:   3'- gaCGGCCCU-GUuCUaUGUUGCC-UGGG- -5'
5259 3' -53.4 NC_001798.1 + 2204 0.7 0.871544
Target:  5'- -gGCCGccGCGcGGcGCAGCGGGCCCg -3'
miRNA:   3'- gaCGGCccUGUuCUaUGUUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 2464 0.66 0.975249
Target:  5'- cCUG-CGGGuCGGGGcccuCGGCGGGCCg -3'
miRNA:   3'- -GACgGCCCuGUUCUau--GUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 2534 0.69 0.91182
Target:  5'- -cGgCGGGGCGGGggGCG-CGGcCCCc -3'
miRNA:   3'- gaCgGCCCUGUUCuaUGUuGCCuGGG- -5'
5259 3' -53.4 NC_001798.1 + 2639 0.68 0.917707
Target:  5'- -gGCCGGGGCGGGGcucuUGCGcuuGCGcGCCUc -3'
miRNA:   3'- gaCGGCCCUGUUCU----AUGU---UGCcUGGG- -5'
5259 3' -53.4 NC_001798.1 + 2961 0.66 0.977722
Target:  5'- -aGgCGGGGCGcgucGGcGUGCGGCGGggcggccgGCCCg -3'
miRNA:   3'- gaCgGCCCUGU----UC-UAUGUUGCC--------UGGG- -5'
5259 3' -53.4 NC_001798.1 + 3005 0.69 0.892725
Target:  5'- --cCCGGGcGCGGGGgcGCGGCGGGCCg -3'
miRNA:   3'- gacGGCCC-UGUUCUa-UGUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 3314 0.67 0.963347
Target:  5'- -gGCaaCGGGGCGgcGGcgGCGGCGGGCUUc -3'
miRNA:   3'- gaCG--GCCCUGU--UCuaUGUUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 3787 0.72 0.749828
Target:  5'- -cGCCGGGGCGcccgAGGccuCGAacCGGGCCCg -3'
miRNA:   3'- gaCGGCCCUGU----UCUau-GUU--GCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 4098 0.75 0.628252
Target:  5'- -gGCCGGGGCGGGcucgGCccugGGCGGGCUCg -3'
miRNA:   3'- gaCGGCCCUGUUCua--UG----UUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 4440 0.66 0.975249
Target:  5'- -gGCCauGGGGuCcGGGUACGccccGCGGACCg -3'
miRNA:   3'- gaCGG--CCCU-GuUCUAUGU----UGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 5917 0.67 0.963347
Target:  5'- -gGCCcGGACGGGG---GGCGGGCCg -3'
miRNA:   3'- gaCGGcCCUGUUCUaugUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 6059 0.67 0.959837
Target:  5'- -cGCCGGcGGCGAGcgggGCAccgACGcACCCg -3'
miRNA:   3'- gaCGGCC-CUGUUCua--UGU---UGCcUGGG- -5'
5259 3' -53.4 NC_001798.1 + 6236 0.68 0.933406
Target:  5'- -gGCCGGGgggacggGCGGGGgacgggGgGACGGGCCg -3'
miRNA:   3'- gaCGGCCC-------UGUUCUa-----UgUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 6281 0.67 0.943502
Target:  5'- -gGCCgggGGGACGGGccgggGgGACGGGCCg -3'
miRNA:   3'- gaCGG---CCCUGUUCua---UgUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 6320 0.67 0.943502
Target:  5'- -gGCCgggGGGACGGGccgggGgGACGGGCCg -3'
miRNA:   3'- gaCGG---CCCUGUUCua---UgUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 6545 0.71 0.831965
Target:  5'- -gGCCGGGGgGAcGggGgGACGGGCCg -3'
miRNA:   3'- gaCGGCCCUgUU-CuaUgUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 6587 0.71 0.831965
Target:  5'- -gGCCGGGGgGAcGggGgGACGGGCCg -3'
miRNA:   3'- gaCGGCCCUgUU-CuaUgUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 8152 0.69 0.885891
Target:  5'- gCUGCgGGGACGGGGgcaaaUGCGuCGuGACUCu -3'
miRNA:   3'- -GACGgCCCUGUUCU-----AUGUuGC-CUGGG- -5'
5259 3' -53.4 NC_001798.1 + 8787 0.75 0.628252
Target:  5'- uCUGCCGGGACGggcgaggccgcgGGGUAaAGCGGcACCg -3'
miRNA:   3'- -GACGGCCCUGU------------UCUAUgUUGCC-UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.