miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 5' -69 NC_001798.1 + 14085 0.68 0.248468
Target:  5'- gAC-CGCUCCauaGCUGCUguaCCCCGGGCa -3'
miRNA:   3'- -UGcGUGGGGg--CGGCGAg--GGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 18059 0.68 0.259653
Target:  5'- aACGCcCCUCCG-CGUagUCCUCCGGGUa -3'
miRNA:   3'- -UGCGuGGGGGCgGCG--AGGGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 21476 0.72 0.146658
Target:  5'- cCGUcCCCCCgGCCgGC-CCCCCGGGUc -3'
miRNA:   3'- uGCGuGGGGG-CGG-CGaGGGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 21792 0.66 0.33546
Target:  5'- cCGC-CCCCCGuCCGggCCCgCCucgGGGCg -3'
miRNA:   3'- uGCGuGGGGGC-GGCgaGGG-GG---CCCGa -5'
5259 5' -69 NC_001798.1 + 21937 0.67 0.295672
Target:  5'- cUGCGgCCCCGCC-C-CCUuuGGGCg -3'
miRNA:   3'- uGCGUgGGGGCGGcGaGGGggCCCGa -5'
5259 5' -69 NC_001798.1 + 22866 0.66 0.34246
Target:  5'- cCGUcgCCCCGCCGCgcggCCCGGGUUc -3'
miRNA:   3'- uGCGugGGGGCGGCGagg-GGGCCCGA- -5'
5259 5' -69 NC_001798.1 + 23066 0.72 0.130252
Target:  5'- uCGCACgaUCCCGUCGCccCCCCCGGaGCg -3'
miRNA:   3'- uGCGUG--GGGGCGGCGa-GGGGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 23271 0.68 0.259084
Target:  5'- cCGgACCCCauggccagccuguCGCCGCgaCCCCCGGcGCc -3'
miRNA:   3'- uGCgUGGGG-------------GCGGCGa-GGGGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 23492 0.72 0.139881
Target:  5'- cCGCGCCCCCGCCaGCgCCgcagaccacgCCgCGGGCg -3'
miRNA:   3'- uGCGUGGGGGCGG-CGaGG----------GG-GCCCGa -5'
5259 5' -69 NC_001798.1 + 23585 0.69 0.237684
Target:  5'- -gGCGCCCCgGCCGagcCCgCCCaGGGCc -3'
miRNA:   3'- ugCGUGGGGgCGGCga-GG-GGG-CCCGa -5'
5259 5' -69 NC_001798.1 + 23614 0.7 0.193927
Target:  5'- aGCcCGCCCCgGcCCGgaCCCCCGcGGCg -3'
miRNA:   3'- -UGcGUGGGGgC-GGCgaGGGGGC-CCGa -5'
5259 5' -69 NC_001798.1 + 23816 0.67 0.321776
Target:  5'- gGC-CGgCCCC-CCGC-CCCCgGGGCg -3'
miRNA:   3'- -UGcGUgGGGGcGGCGaGGGGgCCCGa -5'
5259 5' -69 NC_001798.1 + 24702 0.74 0.10242
Target:  5'- cCGCGCCCCCG-CGCccggggCCCgCGGGCg -3'
miRNA:   3'- uGCGUGGGGGCgGCGa-----GGGgGCCCGa -5'
5259 5' -69 NC_001798.1 + 25064 0.69 0.227295
Target:  5'- aGCGCAagagCCCCGCCccggccaggGCgCCgCCGGGCg -3'
miRNA:   3'- -UGCGUg---GGGGCGG---------CGaGGgGGCCCGa -5'
5259 5' -69 NC_001798.1 + 25135 0.69 0.211954
Target:  5'- gACGC-CCCCCGCCccGCggccgCCCCUcccgcggGGGCc -3'
miRNA:   3'- -UGCGuGGGGGCGG--CGa----GGGGG-------CCCGa -5'
5259 5' -69 NC_001798.1 + 25189 0.68 0.25401
Target:  5'- cCGaCGCCgCCGCCGCggccgccgcgCCCCgCGGcGCUg -3'
miRNA:   3'- uGC-GUGGgGGCGGCGa---------GGGG-GCC-CGA- -5'
5259 5' -69 NC_001798.1 + 25302 0.67 0.30204
Target:  5'- -gGCGCCCUCgGCCGCcgCCCUgGaGGCc -3'
miRNA:   3'- ugCGUGGGGG-CGGCGa-GGGGgC-CCGa -5'
5259 5' -69 NC_001798.1 + 25436 0.67 0.321776
Target:  5'- cGCGCugCgCCGCCccGC-CCCCCGGc-- -3'
miRNA:   3'- -UGCGugGgGGCGG--CGaGGGGGCCcga -5'
5259 5' -69 NC_001798.1 + 25462 0.71 0.157385
Target:  5'- gGCGCGCCcgccgccuucggCCCGCUGCgCgCCUCGGGCc -3'
miRNA:   3'- -UGCGUGG------------GGGCGGCGaG-GGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 25652 0.66 0.356773
Target:  5'- -gGCugUCCUGCCuGCUggcggCCCUGGGCa -3'
miRNA:   3'- ugCGugGGGGCGG-CGAg----GGGGCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.