miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 5' -69 NC_001798.1 + 106 0.77 0.064297
Target:  5'- cGCGCGCCCCCuuccCCGUcccUCCCCCGGaGCc -3'
miRNA:   3'- -UGCGUGGGGGc---GGCG---AGGGGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 142 0.69 0.232441
Target:  5'- cCGCuCCCCCgcgggcGCCGCcccUCCCCCcgcgcgccgcgGGGCUg -3'
miRNA:   3'- uGCGuGGGGG------CGGCG---AGGGGG-----------CCCGA- -5'
5259 5' -69 NC_001798.1 + 199 0.7 0.193483
Target:  5'- -gGCGCCCCCGCgcggcuuuuuuccCGCgcccgCCCCCGcgcGGCa -3'
miRNA:   3'- ugCGUGGGGGCG-------------GCGa----GGGGGC---CCGa -5'
5259 5' -69 NC_001798.1 + 454 0.74 0.10242
Target:  5'- uGCGguCCCgCgGCCGcCUCCCCCGcGGCc -3'
miRNA:   3'- -UGCguGGG-GgCGGC-GAGGGGGC-CCGa -5'
5259 5' -69 NC_001798.1 + 508 0.67 0.28325
Target:  5'- -gGCuuCCCCCGCCcCUCCCCCcGcGCc -3'
miRNA:   3'- ugCGu-GGGGGCGGcGAGGGGGcC-CGa -5'
5259 5' -69 NC_001798.1 + 567 0.67 0.28325
Target:  5'- cCGCGCCCCgUGCCuucccucccGCUCCUgCGGGg- -3'
miRNA:   3'- uGCGUGGGG-GCGG---------CGAGGGgGCCCga -5'
5259 5' -69 NC_001798.1 + 891 0.66 0.326517
Target:  5'- cCGCccgACCCCCGcCCGCccgaCCCCCGaauaaaccacacaaGGCg -3'
miRNA:   3'- uGCG---UGGGGGC-GGCGa---GGGGGC--------------CCGa -5'
5259 5' -69 NC_001798.1 + 1185 0.71 0.172789
Target:  5'- cACGcCGCCgCCCGCCGCggccagcaccgUCCCCgCGcGGCc -3'
miRNA:   3'- -UGC-GUGG-GGGCGGCG-----------AGGGG-GC-CCGa -5'
5259 5' -69 NC_001798.1 + 1326 0.74 0.099967
Target:  5'- cGCGCagaACUCCCGCCGCggcccgcgcagcUCCgCCGGGCc -3'
miRNA:   3'- -UGCG---UGGGGGCGGCG------------AGGgGGCCCGa -5'
5259 5' -69 NC_001798.1 + 3142 0.66 0.328565
Target:  5'- cGCGCGCCggCCGCCGCcaccaCCgCCGGcGCc -3'
miRNA:   3'- -UGCGUGGg-GGCGGCGa----GGgGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 3248 0.7 0.193927
Target:  5'- -aGCACCCCCGCgGCgccguagCCggCGGGCa -3'
miRNA:   3'- ugCGUGGGGGCGgCGa------GGggGCCCGa -5'
5259 5' -69 NC_001798.1 + 3817 0.67 0.315092
Target:  5'- cCGCGCCUCCuCCGCcucgggcgCCCCCcagaggccgGGGCg -3'
miRNA:   3'- uGCGUGGGGGcGGCGa-------GGGGG---------CCCGa -5'
5259 5' -69 NC_001798.1 + 3883 0.67 0.308513
Target:  5'- cACGCGCCCCgggggcgggggGCCGg--CCCCGGGCc -3'
miRNA:   3'- -UGCGUGGGGg----------CGGCgagGGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 4135 0.68 0.265398
Target:  5'- gGCGcCGCCCCCGggGC-CCUCgCGGGCa -3'
miRNA:   3'- -UGC-GUGGGGGCggCGaGGGG-GCCCGa -5'
5259 5' -69 NC_001798.1 + 5015 0.66 0.36335
Target:  5'- cCGCugCUCCGCCGacaucgcCUCCgaCCGGGgUg -3'
miRNA:   3'- uGCGugGGGGCGGC-------GAGGg-GGCCCgA- -5'
5259 5' -69 NC_001798.1 + 5307 0.68 0.271245
Target:  5'- cCGCGCCCCgGCuCGCcgggguuccgCCCCCaGGUg -3'
miRNA:   3'- uGCGUGGGGgCG-GCGa---------GGGGGcCCGa -5'
5259 5' -69 NC_001798.1 + 5409 0.79 0.041066
Target:  5'- uCGCGCCgCCGCCGCUCCgCCCGcgcGGCa -3'
miRNA:   3'- uGCGUGGgGGCGGCGAGG-GGGC---CCGa -5'
5259 5' -69 NC_001798.1 + 5557 0.71 0.153733
Target:  5'- cGCGCucccguugGCCCCCGCCGg-CCCCaaagGGGCc -3'
miRNA:   3'- -UGCG--------UGGGGGCGGCgaGGGGg---CCCGa -5'
5259 5' -69 NC_001798.1 + 7582 0.68 0.243026
Target:  5'- aACGCGCCCgCGuCCGaca-CCCGGGCc -3'
miRNA:   3'- -UGCGUGGGgGC-GGCgaggGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 7695 0.66 0.370756
Target:  5'- gGCGCACCUgcagaugCUGcCCGCggaCCaCCGGGCc -3'
miRNA:   3'- -UGCGUGGG-------GGC-GGCGag-GG-GGCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.