miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 5' -69 NC_001798.1 + 54446 1.05 0.000419
Target:  5'- aACGCACCCCCGCCGCUCCCCCGGGCUc -3'
miRNA:   3'- -UGCGUGGGGGCGGCGAGGGGGCCCGA- -5'
5259 5' -69 NC_001798.1 + 137381 0.85 0.015343
Target:  5'- gGCGCACCCCuCGgCGUUCUCCCGGGCg -3'
miRNA:   3'- -UGCGUGGGG-GCgGCGAGGGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 112020 0.8 0.035328
Target:  5'- cGCGCACCCCgGUCaccaGCaCCCCCGGGCUg -3'
miRNA:   3'- -UGCGUGGGGgCGG----CGaGGGGGCCCGA- -5'
5259 5' -69 NC_001798.1 + 5409 0.79 0.041066
Target:  5'- uCGCGCCgCCGCCGCUCCgCCCGcgcGGCa -3'
miRNA:   3'- uGCGUGGgGGCGGCGAGG-GGGC---CCGa -5'
5259 5' -69 NC_001798.1 + 28962 0.77 0.058229
Target:  5'- gGCGC-CgCCCCGCCGCUCCgCCCgccccaggGGGCg -3'
miRNA:   3'- -UGCGuG-GGGGCGGCGAGG-GGG--------CCCGa -5'
5259 5' -69 NC_001798.1 + 145408 0.77 0.059692
Target:  5'- aGCGCGCCCCCgcccggccGCCGCgcgCCCCCGcccGGCc -3'
miRNA:   3'- -UGCGUGGGGG--------CGGCGa--GGGGGC---CCGa -5'
5259 5' -69 NC_001798.1 + 145492 0.77 0.059692
Target:  5'- cGCGCGCCCCCgcccggccGCCGCgcgCCCCCGcccGGCc -3'
miRNA:   3'- -UGCGUGGGGG--------CGGCGa--GGGGGC---CCGa -5'
5259 5' -69 NC_001798.1 + 145450 0.77 0.059692
Target:  5'- cGCGCGCCCCCgcccggccGCCGCgcgCCCCCGcccGGCc -3'
miRNA:   3'- -UGCGUGGGGG--------CGGCGa--GGGGGC---CCGa -5'
5259 5' -69 NC_001798.1 + 154444 0.77 0.064297
Target:  5'- cGCGCGCCCCCuuccCCGUcccUCCCCCGGaGCc -3'
miRNA:   3'- -UGCGUGGGGGc---GGCG---AGGGGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 106 0.77 0.064297
Target:  5'- cGCGCGCCCCCuuccCCGUcccUCCCCCGGaGCc -3'
miRNA:   3'- -UGCGUGGGGGc---GGCG---AGGGGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 71829 0.76 0.065907
Target:  5'- cCGCugUCCgCGCUGCUCCCCguCGGGCg -3'
miRNA:   3'- uGCGugGGG-GCGGCGAGGGG--GCCCGa -5'
5259 5' -69 NC_001798.1 + 86822 0.76 0.070973
Target:  5'- --uCGCCCCCGUCGCUCCggcucccggCCCGGGCc -3'
miRNA:   3'- ugcGUGGGGGCGGCGAGG---------GGGCCCGa -5'
5259 5' -69 NC_001798.1 + 146616 0.76 0.074557
Target:  5'- cACGC-CUCCCGCCGCauuaggCCCCCgcGGGCa -3'
miRNA:   3'- -UGCGuGGGGGCGGCGa-----GGGGG--CCCGa -5'
5259 5' -69 NC_001798.1 + 79972 0.74 0.095226
Target:  5'- gGCGcCGCgUCCGCCGCcgggCCCCCGGGg- -3'
miRNA:   3'- -UGC-GUGgGGGCGGCGa---GGGGGCCCga -5'
5259 5' -69 NC_001798.1 + 1326 0.74 0.099967
Target:  5'- cGCGCagaACUCCCGCCGCggcccgcgcagcUCCgCCGGGCc -3'
miRNA:   3'- -UGCG---UGGGGGCGGCG------------AGGgGGCCCGa -5'
5259 5' -69 NC_001798.1 + 454 0.74 0.10242
Target:  5'- uGCGguCCCgCgGCCGcCUCCCCCGcGGCc -3'
miRNA:   3'- -UGCguGGG-GgCGGC-GAGGGGGC-CCGa -5'
5259 5' -69 NC_001798.1 + 24702 0.74 0.10242
Target:  5'- cCGCGCCCCCG-CGCccggggCCCgCGGGCg -3'
miRNA:   3'- uGCGUGGGGGCgGCGa-----GGGgGCCCGa -5'
5259 5' -69 NC_001798.1 + 36650 0.74 0.104929
Target:  5'- cGCGCuuuCCCCgCGUCGC-CCCUCGGGUUc -3'
miRNA:   3'- -UGCGu--GGGG-GCGGCGaGGGGGCCCGA- -5'
5259 5' -69 NC_001798.1 + 145761 0.74 0.104929
Target:  5'- -gGCAccccCCCCCGCCGCcCaCCCCGGGg- -3'
miRNA:   3'- ugCGU----GGGGGCGGCGaG-GGGGCCCga -5'
5259 5' -69 NC_001798.1 + 84478 0.73 0.112809
Target:  5'- uGCGCugaacgagACCCUCGaaCGCgUCCCCCGGGCg -3'
miRNA:   3'- -UGCG--------UGGGGGCg-GCG-AGGGGGCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.