miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 3' -56.6 NC_001798.1 + 75850 0.66 0.870848
Target:  5'- aGGCGcugGCCCaGUuugCCCGGGGCgaagagauGCGGg -3'
miRNA:   3'- -UCGU---UGGGaUAua-GGGCCCUG--------CGCCg -5'
5263 3' -56.6 NC_001798.1 + 76510 0.66 0.870848
Target:  5'- uGCAGCgCUucgacgCCCucGACGCGGCg -3'
miRNA:   3'- uCGUUGgGAuaua--GGGccCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 97584 0.66 0.870848
Target:  5'- cGCGGCCCcgag-CCaGGGGCGCaggGGCc -3'
miRNA:   3'- uCGUUGGGauauaGGgCCCUGCG---CCG- -5'
5263 3' -56.6 NC_001798.1 + 108553 0.66 0.867913
Target:  5'- cGGCGccuccGCgCUGUugcgGUCCCGGGccuggguaacauuCGCGGCc -3'
miRNA:   3'- -UCGU-----UGgGAUA----UAGGGCCCu------------GCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 22963 0.67 0.863448
Target:  5'- aGGCGGCCCcgGcGUCCgGGGAgGCcGUc -3'
miRNA:   3'- -UCGUUGGGa-UaUAGGgCCCUgCGcCG- -5'
5263 3' -56.6 NC_001798.1 + 24658 0.67 0.863448
Target:  5'- cGGCGACCUggcggccGUgCCGGGGC-UGGCc -3'
miRNA:   3'- -UCGUUGGGaua----UAgGGCCCUGcGCCG- -5'
5263 3' -56.6 NC_001798.1 + 51119 0.67 0.863448
Target:  5'- gAGCcGCCCccgcgccGUCgCCGGGAggccCGCGGUc -3'
miRNA:   3'- -UCGuUGGGaua----UAG-GGCCCU----GCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 59669 0.67 0.863448
Target:  5'- gGGCGACUCggc-UCgCGuGGGgGCGGCg -3'
miRNA:   3'- -UCGUUGGGauauAGgGC-CCUgCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 152203 0.67 0.863448
Target:  5'- gGGUcGCCCUcucaccGUgCCGGGGgucugcCGCGGCg -3'
miRNA:   3'- -UCGuUGGGAua----UAgGGCCCU------GCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 113636 0.67 0.861943
Target:  5'- cGCGGCCggcgccgCCauguGGGugGCGGCg -3'
miRNA:   3'- uCGUUGGgauaua-GGg---CCCugCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 87966 0.67 0.861188
Target:  5'- cAGCAGCUUgcgGggcuuggacgcgccUCCCGGGGgGuCGGCa -3'
miRNA:   3'- -UCGUUGGGauaU--------------AGGGCCCUgC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 5861 0.67 0.855842
Target:  5'- gAGCAcuggcGCCCUG---CCCGGGGCccgcgucaucccGCGGg -3'
miRNA:   3'- -UCGU-----UGGGAUauaGGGCCCUG------------CGCCg -5'
5263 3' -56.6 NC_001798.1 + 4852 0.67 0.855842
Target:  5'- gGGCGACgguCCgg-GUUCgGGGugGgCGGCg -3'
miRNA:   3'- -UCGUUG---GGauaUAGGgCCCugC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 77191 0.67 0.855842
Target:  5'- cGCGACggcaaGUCCCGcggcgacgguGGACGCGGCc -3'
miRNA:   3'- uCGUUGggauaUAGGGC----------CCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 90467 0.67 0.855842
Target:  5'- gGGUugUCCaggAUAaaCCGGGugGUGGCg -3'
miRNA:   3'- -UCGuuGGGa--UAUagGGCCCugCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 76027 0.67 0.848037
Target:  5'- cGCccGCCCUGggcCCCGaGGccauccagGCGCGGCu -3'
miRNA:   3'- uCGu-UGGGAUauaGGGC-CC--------UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 68771 0.67 0.848037
Target:  5'- cGgGGCCUg----CCCGGGugGcCGGUg -3'
miRNA:   3'- uCgUUGGGauauaGGGCCCugC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 32762 0.67 0.848037
Target:  5'- cGCcACCCgugGUCUCGGGA-GCagGGCg -3'
miRNA:   3'- uCGuUGGGauaUAGGGCCCUgCG--CCG- -5'
5263 3' -56.6 NC_001798.1 + 147237 0.67 0.848037
Target:  5'- cGGgGGCCCcggggcCCCGGGccGCGcCGGCg -3'
miRNA:   3'- -UCgUUGGGauaua-GGGCCC--UGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 134978 0.67 0.848037
Target:  5'- cGCGugCCUGggggCCUGGccCGCGGUg -3'
miRNA:   3'- uCGUugGGAUaua-GGGCCcuGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.