miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 3' -56.6 NC_001798.1 + 75452 0.66 0.891765
Target:  5'- cGCAGgCCgggGUGgccggCCCGGc-CGCGGCc -3'
miRNA:   3'- uCGUUgGGa--UAUa----GGGCCcuGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 75982 0.66 0.891765
Target:  5'- uGCccguGCCCgccgcCCCGGG-CGcCGGCg -3'
miRNA:   3'- uCGu---UGGGauauaGGGCCCuGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 78312 0.66 0.891765
Target:  5'- cGCGGCCCggaAUGaCCCGGaGGCcaccGCGGa -3'
miRNA:   3'- uCGUUGGGa--UAUaGGGCC-CUG----CGCCg -5'
5263 3' -56.6 NC_001798.1 + 124238 0.66 0.891765
Target:  5'- cAGCucCUCUucgggcacCCCGuGGACGCGGUu -3'
miRNA:   3'- -UCGuuGGGAuaua----GGGC-CCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 153947 0.66 0.8911
Target:  5'- cAGCAGCCagcg--CCgcaggagCGaGGACGCGGCc -3'
miRNA:   3'- -UCGUUGGgauauaGG-------GC-CCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 80236 0.66 0.889763
Target:  5'- aGGCccCCCga---CCCGGGgccuccuguucggcACGCGGCu -3'
miRNA:   3'- -UCGuuGGGauauaGGGCCC--------------UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 139416 0.66 0.888416
Target:  5'- cAGCAGCCCggggccagaCCCgccgugcgguucaGGGACGaGGCg -3'
miRNA:   3'- -UCGUUGGGauaua----GGG-------------CCCUGCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 78359 0.66 0.88774
Target:  5'- gGGUcACCCUgccGUGUCCCagcgaGGacgcgcuggucgcguGCGCGGCg -3'
miRNA:   3'- -UCGuUGGGA---UAUAGGGc----CC---------------UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 133886 0.66 0.885012
Target:  5'- uAGC-ACCCUAUAagUCUGGGGC-CGcGCu -3'
miRNA:   3'- -UCGuUGGGAUAUa-GGGCCCUGcGC-CG- -5'
5263 3' -56.6 NC_001798.1 + 76346 0.66 0.885012
Target:  5'- gGGcCAGCCCcuagAUGccCCCGaGGACcugGCGGCc -3'
miRNA:   3'- -UC-GUUGGGa---UAUa-GGGC-CCUG---CGCCG- -5'
5263 3' -56.6 NC_001798.1 + 10612 0.66 0.885012
Target:  5'- uGGCGAgCg---GUUCCGGGGCGCGcauGCa -3'
miRNA:   3'- -UCGUUgGgauaUAGGGCCCUGCGC---CG- -5'
5263 3' -56.6 NC_001798.1 + 20854 0.66 0.885012
Target:  5'- gGGCuuACCCUcagAUUCCGacgagcuggggaGGACGgGGCg -3'
miRNA:   3'- -UCGu-UGGGAua-UAGGGC------------CCUGCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 23718 0.66 0.885012
Target:  5'- gGGCGGCCCcggcggGUCgagCUGGacgccGACGCGGCc -3'
miRNA:   3'- -UCGUUGGGaua---UAG---GGCC-----CUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 135301 0.66 0.885012
Target:  5'- cGgAGCCCUGgg-CCCGGGcCGUGcuggaGCg -3'
miRNA:   3'- uCgUUGGGAUauaGGGCCCuGCGC-----CG- -5'
5263 3' -56.6 NC_001798.1 + 16049 0.66 0.885012
Target:  5'- aAGCGACgCgUGguagGUCgCUGGGG-GCGGCg -3'
miRNA:   3'- -UCGUUG-GgAUa---UAG-GGCCCUgCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 139145 0.66 0.878038
Target:  5'- cGCcGCCUgcagcUgUCGGGugGCGGCc -3'
miRNA:   3'- uCGuUGGGauau-AgGGCCCugCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 56541 0.66 0.878038
Target:  5'- gGGC-GCCCgcacgAUGU-CUGGGACGCgacGGCc -3'
miRNA:   3'- -UCGuUGGGa----UAUAgGGCCCUGCG---CCG- -5'
5263 3' -56.6 NC_001798.1 + 76510 0.66 0.870848
Target:  5'- uGCAGCgCUucgacgCCCucGACGCGGCg -3'
miRNA:   3'- uCGUUGgGAuaua--GGGccCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 75850 0.66 0.870848
Target:  5'- aGGCGcugGCCCaGUuugCCCGGGGCgaagagauGCGGg -3'
miRNA:   3'- -UCGU---UGGGaUAua-GGGCCCUG--------CGCCg -5'
5263 3' -56.6 NC_001798.1 + 66007 0.66 0.870848
Target:  5'- -aCGAcCCCUGUcgCCCcagGGcGAUGUGGCg -3'
miRNA:   3'- ucGUU-GGGAUAuaGGG---CC-CUGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.