miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 3' -56.6 NC_001798.1 + 16418 0.66 0.904596
Target:  5'- -aCGACCCgcacGUCUUugGGGACGgCGGCu -3'
miRNA:   3'- ucGUUGGGaua-UAGGG--CCCUGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 18595 0.71 0.611334
Target:  5'- aAGCAGCCCc----CCCGGGucCGCGcGCc -3'
miRNA:   3'- -UCGUUGGGauauaGGGCCCu-GCGC-CG- -5'
5263 3' -56.6 NC_001798.1 + 20854 0.66 0.885012
Target:  5'- gGGCuuACCCUcagAUUCCGacgagcuggggaGGACGgGGCg -3'
miRNA:   3'- -UCGu-UGGGAua-UAGGGC------------CCUGCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 21725 0.66 0.905214
Target:  5'- cGCAGccggugugcCCCUGgugcggcggcgaCCGGGACGcCGGCc -3'
miRNA:   3'- uCGUU---------GGGAUauag--------GGCCCUGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 22119 0.66 0.891765
Target:  5'- gGGCGACCUcgccggCCCcuuuGGGGC-CGGCg -3'
miRNA:   3'- -UCGUUGGGauaua-GGG----CCCUGcGCCG- -5'
5263 3' -56.6 NC_001798.1 + 22390 0.76 0.369413
Target:  5'- gGGCGgaACCCcgGcGagCCGGGGCGCGGCg -3'
miRNA:   3'- -UCGU--UGGGa-UaUagGGCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 22880 0.66 0.898295
Target:  5'- cGCGGCCCggg--UUCGGGugGCacGGUg -3'
miRNA:   3'- uCGUUGGGauauaGGGCCCugCG--CCG- -5'
5263 3' -56.6 NC_001798.1 + 22963 0.67 0.863448
Target:  5'- aGGCGGCCCcgGcGUCCgGGGAgGCcGUc -3'
miRNA:   3'- -UCGUUGGGa-UaUAGGgCCCUgCGcCG- -5'
5263 3' -56.6 NC_001798.1 + 23559 0.71 0.609307
Target:  5'- gGGguGCCCgcgagggcCCCGGGG-GCGGCg -3'
miRNA:   3'- -UCguUGGGauaua---GGGCCCUgCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 23608 0.66 0.898295
Target:  5'- gGGCcgAGCCCgccccggCCCGGaccccCGCGGCg -3'
miRNA:   3'- -UCG--UUGGGauaua--GGGCCcu---GCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 23648 0.66 0.898295
Target:  5'- gGGCcGCCUggagcgcCgCCGGGcccGCGCGGCg -3'
miRNA:   3'- -UCGuUGGGauaua--G-GGCCC---UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 23718 0.66 0.885012
Target:  5'- gGGCGGCCCcggcggGUCgagCUGGacgccGACGCGGCc -3'
miRNA:   3'- -UCGUUGGGaua---UAG---GGCC-----CUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 23815 0.74 0.47384
Target:  5'- gGGcCGGCCCcccgccCCCGGGGCGCGuGCu -3'
miRNA:   3'- -UC-GUUGGGauaua-GGGCCCUGCGC-CG- -5'
5263 3' -56.6 NC_001798.1 + 23935 0.66 0.870848
Target:  5'- cGGC-GCCCgUGUGggcgccgagCUgGGcGACGCGGCg -3'
miRNA:   3'- -UCGuUGGG-AUAUa--------GGgCC-CUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 24029 0.73 0.502213
Target:  5'- uGGCuccagAACCCgcgcGUGgcgCCCgGGGACGUGGCg -3'
miRNA:   3'- -UCG-----UUGGGa---UAUa--GGG-CCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 24075 0.69 0.760619
Target:  5'- aGGCcugcuUCCgg-AUCUCGGG-CGCGGCg -3'
miRNA:   3'- -UCGuu---GGGauaUAGGGCCCuGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 24109 0.7 0.672161
Target:  5'- cAGCAGCuCCUucAUCuCCGGcaGCGUGGCg -3'
miRNA:   3'- -UCGUUG-GGAuaUAG-GGCCc-UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 24307 0.66 0.904596
Target:  5'- cGCGGCgCUGa---CCGGGGCGCGa- -3'
miRNA:   3'- uCGUUGgGAUauagGGCCCUGCGCcg -5'
5263 3' -56.6 NC_001798.1 + 24612 0.69 0.770007
Target:  5'- uGGCcGCCUgccgcgggAUCCUGGaGGCGCuGGCg -3'
miRNA:   3'- -UCGuUGGGaua-----UAGGGCC-CUGCG-CCG- -5'
5263 3' -56.6 NC_001798.1 + 24658 0.67 0.863448
Target:  5'- cGGCGACCUggcggccGUgCCGGGGC-UGGCc -3'
miRNA:   3'- -UCGUUGGGaua----UAgGGCCCUGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.