miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 3' -56.6 NC_001798.1 + 422 0.68 0.787505
Target:  5'- cGGCAGCCCcucccccccgcgcgCCaCGGGGCuGCGGUc -3'
miRNA:   3'- -UCGUUGGGauaua---------GG-GCCCUG-CGCCG- -5'
5263 3' -56.6 NC_001798.1 + 1514 0.73 0.531305
Target:  5'- cGGCGGCCCggccGUCcagcgCCGGGagcacgGCGCGGCg -3'
miRNA:   3'- -UCGUUGGGaua-UAG-----GGCCC------UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 1956 0.72 0.605254
Target:  5'- cAGCAcGCCCUGcgcgCCCagcgccgagacgucgGGGGCGCGGUc -3'
miRNA:   3'- -UCGU-UGGGAUaua-GGG---------------CCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 2482 0.73 0.538182
Target:  5'- cGGCGGgCCggcgggucagcgCCgCGGGGCGCGGCg -3'
miRNA:   3'- -UCGUUgGGauaua-------GG-GCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 2593 0.67 0.848037
Target:  5'- cGCGGCUCUucuUCggGGGGCGCGGg -3'
miRNA:   3'- uCGUUGGGAuauAGggCCCUGCGCCg -5'
5263 3' -56.6 NC_001798.1 + 2627 0.75 0.39402
Target:  5'- cGGCGgcGCCCUGg---CCGGGGCGgGGCu -3'
miRNA:   3'- -UCGU--UGGGAUauagGGCCCUGCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 2989 0.73 0.502213
Target:  5'- cGGcCGGCCCgcgggCCCcgggcgcgGGGGCGCGGCg -3'
miRNA:   3'- -UC-GUUGGGauauaGGG--------CCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 3295 0.66 0.904596
Target:  5'- cGGCGACgCCgccg-CCgacggcaaCGGGGCGgCGGCg -3'
miRNA:   3'- -UCGUUG-GGauauaGG--------GCCCUGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 4069 0.71 0.651927
Target:  5'- aGGCGGCCCgcgGUCgccgcggggguCCGGGcCGgGGCg -3'
miRNA:   3'- -UCGUUGGGauaUAG-----------GGCCCuGCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 4825 0.74 0.446295
Target:  5'- uGCcACCCgaa--CCCGGGccGCGCGGCg -3'
miRNA:   3'- uCGuUGGGauauaGGGCCC--UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 4852 0.67 0.855842
Target:  5'- gGGCGACgguCCgg-GUUCgGGGugGgCGGCg -3'
miRNA:   3'- -UCGUUG---GGauaUAGGgCCCugC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 5861 0.67 0.855842
Target:  5'- gAGCAcuggcGCCCUG---CCCGGGGCccgcgucaucccGCGGg -3'
miRNA:   3'- -UCGU-----UGGGAUauaGGGCCCUG------------CGCCg -5'
5263 3' -56.6 NC_001798.1 + 6200 0.69 0.722035
Target:  5'- uGCAGCCUUAUcgcagguacgguGaCCCGGGGgGcCGGCc -3'
miRNA:   3'- uCGUUGGGAUA------------UaGGGCCCUgC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 10612 0.66 0.885012
Target:  5'- uGGCGAgCg---GUUCCGGGGCGCGcauGCa -3'
miRNA:   3'- -UCGUUgGgauaUAGGGCCCUGCGC---CG- -5'
5263 3' -56.6 NC_001798.1 + 10730 0.68 0.823494
Target:  5'- cGCGGCCCacaguaguuUGUGggCCCGGGugcguucCGCGGg -3'
miRNA:   3'- uCGUUGGG---------AUAUa-GGGCCCu------GCGCCg -5'
5263 3' -56.6 NC_001798.1 + 11642 0.8 0.206483
Target:  5'- gGGCGuCCCUGUGUCCCcgGGGGCGgGGg -3'
miRNA:   3'- -UCGUuGGGAUAUAGGG--CCCUGCgCCg -5'
5263 3' -56.6 NC_001798.1 + 14031 0.67 0.831856
Target:  5'- cGCAcaACCC-AUG-CCCGGcACGgGGCg -3'
miRNA:   3'- uCGU--UGGGaUAUaGGGCCcUGCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 15270 0.75 0.411004
Target:  5'- gGGCGguGCCCcggGUUCCGGG-CGUGGCg -3'
miRNA:   3'- -UCGU--UGGGauaUAGGGCCCuGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 16049 0.66 0.885012
Target:  5'- aAGCGACgCgUGguagGUCgCUGGGG-GCGGCg -3'
miRNA:   3'- -UCGUUG-GgAUa---UAG-GGCCCUgCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 16174 0.66 0.903354
Target:  5'- gGGCGGCCCgcggggaCCgggGGGACGCacgGGCc -3'
miRNA:   3'- -UCGUUGGGauauag-GG---CCCUGCG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.