miRNA display CGI


Results 1 - 20 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 3' -56.6 NC_001798.1 + 154284 0.69 0.751119
Target:  5'- cGCAGCCCgggccGUGUUgCGGGcccucuuaagGgGCGGCg -3'
miRNA:   3'- uCGUUGGGa----UAUAGgGCCC----------UgCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 154104 0.66 0.904596
Target:  5'- cGCGGCCggcg--CCgGGGACcccgGCGGCg -3'
miRNA:   3'- uCGUUGGgauauaGGgCCCUG----CGCCG- -5'
5263 3' -56.6 NC_001798.1 + 154056 0.75 0.419665
Target:  5'- cGCGGCacggCUGgagCgCCGGGGCGCGGCa -3'
miRNA:   3'- uCGUUGg---GAUauaG-GGCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 153947 0.66 0.8911
Target:  5'- cAGCAGCCagcg--CCgcaggagCGaGGACGCGGCc -3'
miRNA:   3'- -UCGUUGGgauauaGG-------GC-CCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 153209 0.72 0.561981
Target:  5'- -uCAACCCUAgaccgcccgacggCCCGGGccCGCGGCg -3'
miRNA:   3'- ucGUUGGGAUaua----------GGGCCCu-GCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 152203 0.67 0.863448
Target:  5'- gGGUcGCCCUcucaccGUgCCGGGGgucugcCGCGGCg -3'
miRNA:   3'- -UCGuUGGGAua----UAgGGCCCU------GCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 151594 0.69 0.766266
Target:  5'- gGGCuGCCCUGgcgcucggccgggGgccgggCCgGGGGCGUGGCc -3'
miRNA:   3'- -UCGuUGGGAUa------------Ua-----GGgCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 151190 0.7 0.692268
Target:  5'- gGGCGcggACCgUGUGUCCCcccagcgacaGGGAgCGCGGg -3'
miRNA:   3'- -UCGU---UGGgAUAUAGGG----------CCCU-GCGCCg -5'
5263 3' -56.6 NC_001798.1 + 150561 0.74 0.464562
Target:  5'- gAGCGGCCCgggg-CCCGcGGG-GCGGCg -3'
miRNA:   3'- -UCGUUGGGauauaGGGC-CCUgCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 150009 0.71 0.620463
Target:  5'- gAGCGGCCCguggccgcgGUcgcccgaguccgaGUCCgGGGcccgGCGCGGCg -3'
miRNA:   3'- -UCGUUGGGa--------UA-------------UAGGgCCC----UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 149945 0.69 0.722035
Target:  5'- cGGCGACCgCgg---CCUGGGACGaCGGa -3'
miRNA:   3'- -UCGUUGG-GauauaGGGCCCUGC-GCCg -5'
5263 3' -56.6 NC_001798.1 + 147237 0.67 0.848037
Target:  5'- cGGgGGCCCcggggcCCCGGGccGCGcCGGCg -3'
miRNA:   3'- -UCgUUGGGauaua-GGGCCC--UGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 146804 0.73 0.531305
Target:  5'- uGCGucauCCCUGUcuuuauaaaaCCgGGGGCGCGGCa -3'
miRNA:   3'- uCGUu---GGGAUAua--------GGgCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 143799 0.68 0.814961
Target:  5'- gAGCAuaaagACCagg---CCCGGGcggcGCGCGGCc -3'
miRNA:   3'- -UCGU-----UGGgauauaGGGCCC----UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 141095 0.69 0.722035
Target:  5'- cGGCAgaACuCCUGUcgCuacgCCGGGACGCcgccGGCg -3'
miRNA:   3'- -UCGU--UG-GGAUAuaG----GGCCCUGCG----CCG- -5'
5263 3' -56.6 NC_001798.1 + 140502 0.68 0.797411
Target:  5'- -cCAACCCggccaaccUUCCGGGguggACGCGGCu -3'
miRNA:   3'- ucGUUGGGauau----AGGGCCC----UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 139549 0.78 0.302103
Target:  5'- uGCcGCgCCUGcagugGUUCCGGGACGUGGCg -3'
miRNA:   3'- uCGuUG-GGAUa----UAGGGCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 139416 0.66 0.888416
Target:  5'- cAGCAGCCCggggccagaCCCgccgugcgguucaGGGACGaGGCg -3'
miRNA:   3'- -UCGUUGGGauaua----GGG-------------CCCUGCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 139145 0.66 0.878038
Target:  5'- cGCcGCCUgcagcUgUCGGGugGCGGCc -3'
miRNA:   3'- uCGuUGGGauau-AgGGCCCugCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 138157 0.7 0.692268
Target:  5'- cGCGcCCCcggGUCCUGGGGgcgcgaccCGCGGCc -3'
miRNA:   3'- uCGUuGGGauaUAGGGCCCU--------GCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.