miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 3' -56.6 NC_001798.1 + 53028 1.12 0.001653
Target:  5'- aAGCAACCCUAUAUCCCGGGACGCGGCa -3'
miRNA:   3'- -UCGUUGGGAUAUAGGGCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 113504 0.84 0.115372
Target:  5'- cGCGGCCCUGUGcgCCCuGGugGCGGCc -3'
miRNA:   3'- uCGUUGGGAUAUa-GGGcCCugCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 11642 0.8 0.206483
Target:  5'- gGGCGuCCCUGUGUCCCcgGGGGCGgGGg -3'
miRNA:   3'- -UCGUuGGGAUAUAGGG--CCCUGCgCCg -5'
5263 3' -56.6 NC_001798.1 + 139549 0.78 0.302103
Target:  5'- uGCcGCgCCUGcagugGUUCCGGGACGUGGCg -3'
miRNA:   3'- uCGuUG-GGAUa----UAGGGCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 74814 0.76 0.353603
Target:  5'- cGCAgacACCCg----CCgGGGACGCGGCc -3'
miRNA:   3'- uCGU---UGGGauauaGGgCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 22390 0.76 0.369413
Target:  5'- gGGCGgaACCCcgGcGagCCGGGGCGCGGCg -3'
miRNA:   3'- -UCGU--UGGGa-UaUagGGCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 132132 0.76 0.369413
Target:  5'- aGGCGGCCCUGcgccgCCgGGGGC-CGGCg -3'
miRNA:   3'- -UCGUUGGGAUaua--GGgCCCUGcGCCG- -5'
5263 3' -56.6 NC_001798.1 + 2627 0.75 0.39402
Target:  5'- cGGCGgcGCCCUGg---CCGGGGCGgGGCu -3'
miRNA:   3'- -UCGU--UGGGAUauagGGCCCUGCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 121729 0.75 0.402455
Target:  5'- cGGCGGCCCaccUGUCCCuGGGGauggggaaaGCGGCa -3'
miRNA:   3'- -UCGUUGGGau-AUAGGG-CCCUg--------CGCCG- -5'
5263 3' -56.6 NC_001798.1 + 15270 0.75 0.411004
Target:  5'- gGGCGguGCCCcggGUUCCGGG-CGUGGCg -3'
miRNA:   3'- -UCGU--UGGGauaUAGGGCCCuGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 154056 0.75 0.419665
Target:  5'- cGCGGCacggCUGgagCgCCGGGGCGCGGCa -3'
miRNA:   3'- uCGUUGg---GAUauaG-GGCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 24711 0.75 0.428435
Target:  5'- cGC-GCCCgggg-CCCGcGGGCGCGGCc -3'
miRNA:   3'- uCGuUGGGauauaGGGC-CCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 4825 0.74 0.446295
Target:  5'- uGCcACCCgaa--CCCGGGccGCGCGGCg -3'
miRNA:   3'- uCGuUGGGauauaGGGCCC--UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 58276 0.74 0.455379
Target:  5'- cAGCAGCggguCCgugagGUCCCGGGGCGCGa- -3'
miRNA:   3'- -UCGUUG----GGaua--UAGGGCCCUGCGCcg -5'
5263 3' -56.6 NC_001798.1 + 150561 0.74 0.464562
Target:  5'- gAGCGGCCCgggg-CCCGcGGG-GCGGCg -3'
miRNA:   3'- -UCGUUGGGauauaGGGC-CCUgCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 106276 0.74 0.464562
Target:  5'- uAGaCGACCUUGUccCCCGGaGGCGCGaGCg -3'
miRNA:   3'- -UC-GUUGGGAUAuaGGGCC-CUGCGC-CG- -5'
5263 3' -56.6 NC_001798.1 + 59455 0.74 0.47384
Target:  5'- cGCAcCCCgcgugCCCGGG-CGCGGUg -3'
miRNA:   3'- uCGUuGGGauauaGGGCCCuGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 23815 0.74 0.47384
Target:  5'- gGGcCGGCCCcccgccCCCGGGGCGCGuGCu -3'
miRNA:   3'- -UC-GUUGGGauaua-GGGCCCUGCGC-CG- -5'
5263 3' -56.6 NC_001798.1 + 123929 0.74 0.483211
Target:  5'- uGCuguGCCCUGgGUCCgGGGGCcugGUGGCa -3'
miRNA:   3'- uCGu--UGGGAUaUAGGgCCCUG---CGCCG- -5'
5263 3' -56.6 NC_001798.1 + 77685 0.74 0.483211
Target:  5'- uGGCGGCCCagcgcgCCCGGGGCaGCaGCg -3'
miRNA:   3'- -UCGUUGGGauaua-GGGCCCUG-CGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.