miRNA display CGI


Results 21 - 40 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 3' -56.6 NC_001798.1 + 124199 0.74 0.49267
Target:  5'- cAGCGcACCCUGgccGUCCgggGGGACGCGaGCc -3'
miRNA:   3'- -UCGU-UGGGAUa--UAGGg--CCCUGCGC-CG- -5'
5263 3' -56.6 NC_001798.1 + 24029 0.73 0.502213
Target:  5'- uGGCuccagAACCCgcgcGUGgcgCCCgGGGACGUGGCg -3'
miRNA:   3'- -UCG-----UUGGGa---UAUa--GGG-CCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 2989 0.73 0.502213
Target:  5'- cGGcCGGCCCgcgggCCCcgggcgcgGGGGCGCGGCg -3'
miRNA:   3'- -UC-GUUGGGauauaGGG--------CCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 42614 0.73 0.511836
Target:  5'- cGCGGCCUcGUcgUCCGGGAgGgGGCc -3'
miRNA:   3'- uCGUUGGGaUAuaGGGCCCUgCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 26354 0.73 0.525435
Target:  5'- cGGCGGCCCggcggagcugCgCGGGcCGCGGCg -3'
miRNA:   3'- -UCGUUGGGauaua-----GgGCCCuGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 111607 0.73 0.531305
Target:  5'- gGGCGGCCUccUGgagcCCCGGGG-GCGGCa -3'
miRNA:   3'- -UCGUUGGGauAUa---GGGCCCUgCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 123391 0.73 0.531305
Target:  5'- aGGCGACgCCaggcccCCCGGGAgcCGCGGCc -3'
miRNA:   3'- -UCGUUG-GGauaua-GGGCCCU--GCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 1514 0.73 0.531305
Target:  5'- cGGCGGCCCggccGUCcagcgCCGGGagcacgGCGCGGCg -3'
miRNA:   3'- -UCGUUGGGaua-UAG-----GGCCC------UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 146804 0.73 0.531305
Target:  5'- uGCGucauCCCUGUcuuuauaaaaCCgGGGGCGCGGCa -3'
miRNA:   3'- uCGUu---GGGAUAua--------GGgCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 2482 0.73 0.538182
Target:  5'- cGGCGGgCCggcgggucagcgCCgCGGGGCGCGGCg -3'
miRNA:   3'- -UCGUUgGGauaua-------GG-GCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 29474 0.72 0.551034
Target:  5'- gAGUAcACCCgguugGUCCCcgGGGACGgGGCc -3'
miRNA:   3'- -UCGU-UGGGaua--UAGGG--CCCUGCgCCG- -5'
5263 3' -56.6 NC_001798.1 + 32365 0.72 0.560984
Target:  5'- gGGCGGCCCcgag-CCCGGGGCccgcgaccCGGCg -3'
miRNA:   3'- -UCGUUGGGauauaGGGCCCUGc-------GCCG- -5'
5263 3' -56.6 NC_001798.1 + 153209 0.72 0.561981
Target:  5'- -uCAACCCUAgaccgcccgacggCCCGGGccCGCGGCg -3'
miRNA:   3'- ucGUUGGGAUaua----------GGGCCCu-GCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 36257 0.72 0.581022
Target:  5'- cGCGcUCCUGUGUggacCCCGGGGuggGCGGCg -3'
miRNA:   3'- uCGUuGGGAUAUA----GGGCCCUg--CGCCG- -5'
5263 3' -56.6 NC_001798.1 + 36134 0.72 0.591099
Target:  5'- cGCGAUCCcg---CCggUGGGGCGCGGCg -3'
miRNA:   3'- uCGUUGGGauauaGG--GCCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 59885 0.72 0.591099
Target:  5'- gGGcCGGCCCgagaGUCCUGGGACGCcaaGCu -3'
miRNA:   3'- -UC-GUUGGGaua-UAGGGCCCUGCGc--CG- -5'
5263 3' -56.6 NC_001798.1 + 76562 0.72 0.591099
Target:  5'- cGCGGCCUUc-GUCCCGGcGAC-CGGCc -3'
miRNA:   3'- uCGUUGGGAuaUAGGGCC-CUGcGCCG- -5'
5263 3' -56.6 NC_001798.1 + 1956 0.72 0.605254
Target:  5'- cAGCAcGCCCUGcgcgCCCagcgccgagacgucgGGGGCGCGGUc -3'
miRNA:   3'- -UCGU-UGGGAUaua-GGG---------------CCCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 23559 0.71 0.609307
Target:  5'- gGGguGCCCgcgagggcCCCGGGG-GCGGCg -3'
miRNA:   3'- -UCguUGGGauaua---GGGCCCUgCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 31879 0.71 0.611334
Target:  5'- cGGCGGCCCgcc--CCCGGaagaGGCGCGGg -3'
miRNA:   3'- -UCGUUGGGauauaGGGCC----CUGCGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.