miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 5' -64.6 NC_001798.1 + 150620 0.67 0.501798
Target:  5'- uGG-GGGGCUCCUgGGCCGcGCGGggCUg -3'
miRNA:   3'- gCCgCCCCGGGGG-CUGGCuUGCCa-GA- -5'
5263 5' -64.6 NC_001798.1 + 2546 0.67 0.4991
Target:  5'- gGGCGcGGCCCCCGcgggaggggcggccGCgGGGCGGg-- -3'
miRNA:   3'- gCCGCcCCGGGGGC--------------UGgCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 95327 0.67 0.49283
Target:  5'- gGGCGGGGCCCacgagcauucgCUGugCGAGCaG-CUc -3'
miRNA:   3'- gCCGCCCCGGG-----------GGCugGCUUGcCaGA- -5'
5263 5' -64.6 NC_001798.1 + 3020 0.67 0.490155
Target:  5'- gCGGCGGGccgggcuccggccaGCCCCggcaCGGCCGccaGGUCg -3'
miRNA:   3'- -GCCGCCC--------------CGGGG----GCUGGCuugCCAGa -5'
5263 5' -64.6 NC_001798.1 + 54368 0.67 0.483937
Target:  5'- gCGGCGuccGGCCCaCCGggggGCCGcggcGCGGUCg -3'
miRNA:   3'- -GCCGCc--CCGGG-GGC----UGGCu---UGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 56773 0.67 0.483937
Target:  5'- aGGUgcgcgGGGGgCCCUGGCCGccGACGGcCg -3'
miRNA:   3'- gCCG-----CCCCgGGGGCUGGC--UUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 34810 0.67 0.483937
Target:  5'- gGGCcccGGGGCCCCCGcgcuccGCCGGGggccCGGg-- -3'
miRNA:   3'- gCCG---CCCCGGGGGC------UGGCUU----GCCaga -5'
5263 5' -64.6 NC_001798.1 + 27918 0.67 0.483937
Target:  5'- cCGcCGGGGUCCCCGccGCCGG--GGUCc -3'
miRNA:   3'- -GCcGCCCCGGGGGC--UGGCUugCCAGa -5'
5263 5' -64.6 NC_001798.1 + 61461 0.67 0.475122
Target:  5'- gCGcCGGGGCCUCCGGgccCCGGAgGG-CUa -3'
miRNA:   3'- -GCcGCCCCGGGGGCU---GGCUUgCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 91625 0.67 0.475122
Target:  5'- gGGCGGccGGCCgCCCGGgUGAGCGugacGUCa -3'
miRNA:   3'- gCCGCC--CCGG-GGGCUgGCUUGC----CAGa -5'
5263 5' -64.6 NC_001798.1 + 51961 0.67 0.475122
Target:  5'- gCGGgaGGGGCCgcgcccccccacCCCGGCCccGAcgccGCGGUCUu -3'
miRNA:   3'- -GCCg-CCCCGG------------GGGCUGG--CU----UGCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 34984 0.68 0.466387
Target:  5'- aGGUgcgGGGGCCCcuCCGGCCGGggcgcaccucgGCGGcCa -3'
miRNA:   3'- gCCG---CCCCGGG--GGCUGGCU-----------UGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 79690 0.68 0.466387
Target:  5'- aGGCGGccugcgugcGGCCCCCGcuuCCG-ACGGa-- -3'
miRNA:   3'- gCCGCC---------CCGGGGGCu--GGCuUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 147152 0.68 0.455159
Target:  5'- cCGGcCGGGGgUCCCGgguagccgcccggcGCCGGGCGGa-- -3'
miRNA:   3'- -GCC-GCCCCgGGGGC--------------UGGCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 73241 0.68 0.452588
Target:  5'- cCGGCccgGGGGCCCCCGGggacCUGGaggcccaagaugccgGCGGUa- -3'
miRNA:   3'- -GCCG---CCCCGGGGGCU----GGCU---------------UGCCAga -5'
5263 5' -64.6 NC_001798.1 + 18314 0.68 0.449173
Target:  5'- aGGcCGGGGCCguguuugucUCCGGCgGGACGGa-- -3'
miRNA:   3'- gCC-GCCCCGG---------GGGCUGgCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 2980 0.68 0.449173
Target:  5'- gCGGCGGGGCggCCGGCCc-GCGGg-- -3'
miRNA:   3'- -GCCGCCCCGggGGCUGGcuUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 83875 0.68 0.449173
Target:  5'- aGGCGGcGaCCCCCGGCCcGGGCGcUCc -3'
miRNA:   3'- gCCGCCcC-GGGGGCUGG-CUUGCcAGa -5'
5263 5' -64.6 NC_001798.1 + 36557 0.68 0.440698
Target:  5'- gGGCGGGGgCgCgcggCGGCCGGGCGGgggCg -3'
miRNA:   3'- gCCGCCCCgGgG----GCUGGCUUGCCa--Ga -5'
5263 5' -64.6 NC_001798.1 + 36515 0.68 0.440698
Target:  5'- gGGCGGGGgCgCgcggCGGCCGGGCGGgggCg -3'
miRNA:   3'- gCCGCCCCgGgG----GCUGGCUUGCCa--Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.