miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 5' -64.6 NC_001798.1 + 28355 0.66 0.547619
Target:  5'- cCGGCGGcGGCCCCCcgcguccCCGcccGCGGa-- -3'
miRNA:   3'- -GCCGCC-CCGGGGGcu-----GGCu--UGCCaga -5'
5263 5' -64.6 NC_001798.1 + 91778 0.66 0.547619
Target:  5'- gGGCGGccacGCCCCCuGCCGAugacgcGCGGg-- -3'
miRNA:   3'- gCCGCCc---CGGGGGcUGGCU------UGCCaga -5'
5263 5' -64.6 NC_001798.1 + 109027 0.66 0.547619
Target:  5'- gCGGUGcuccccGGGCCUCCGGCCGGccccaGGUa- -3'
miRNA:   3'- -GCCGC------CCCGGGGGCUGGCUug---CCAga -5'
5263 5' -64.6 NC_001798.1 + 151853 0.66 0.547619
Target:  5'- aGGCGGGaCCCCCGcGCCGuguccccCGuGUCc -3'
miRNA:   3'- gCCGCCCcGGGGGC-UGGCuu-----GC-CAGa -5'
5263 5' -64.6 NC_001798.1 + 91205 0.66 0.547619
Target:  5'- cCGGCccgaGGGCCUuuGGCUGcguucCGGUCUg -3'
miRNA:   3'- -GCCGc---CCCGGGggCUGGCuu---GCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 96715 0.66 0.542044
Target:  5'- gCGGUGGGgucgggccucaucguGCCCCCGgaGCUGAGCGacccGUCc -3'
miRNA:   3'- -GCCGCCC---------------CGGGGGC--UGGCUUGC----CAGa -5'
5263 5' -64.6 NC_001798.1 + 4056 0.66 0.538337
Target:  5'- cCGGCGGcGCUCCaggCGGCCc-GCGGUCg -3'
miRNA:   3'- -GCCGCCcCGGGG---GCUGGcuUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 29799 0.66 0.538337
Target:  5'- gGGCGGa--CCCCGGCCccGAGCGGcCg -3'
miRNA:   3'- gCCGCCccgGGGGCUGG--CUUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 76069 0.67 0.52911
Target:  5'- aCGuGCGGauccaGGCCCgCCGGgCGAucgagagcGCGGUCa -3'
miRNA:   3'- -GC-CGCC-----CCGGG-GGCUgGCU--------UGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 43054 0.67 0.519942
Target:  5'- gCGGCGcGuGaGCCgCCGGCCGAGCGcGcCg -3'
miRNA:   3'- -GCCGC-C-C-CGGgGGCUGGCUUGC-CaGa -5'
5263 5' -64.6 NC_001798.1 + 28817 0.67 0.519942
Target:  5'- cCGcCGcGGGCCCgggCCG-UCGGGCGGUCUa -3'
miRNA:   3'- -GCcGC-CCCGGG---GGCuGGCUUGCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 111726 0.67 0.519028
Target:  5'- aCGGUGGcccgcuuGGCCCCCGcgcccCCGGcccCGGUCc -3'
miRNA:   3'- -GCCGCC-------CCGGGGGCu----GGCUu--GCCAGa -5'
5263 5' -64.6 NC_001798.1 + 78971 0.67 0.519028
Target:  5'- cCGGgGGGGCgCCUGGaagucccCCGAGgGGUUc -3'
miRNA:   3'- -GCCgCCCCGgGGGCU-------GGCUUgCCAGa -5'
5263 5' -64.6 NC_001798.1 + 46408 0.67 0.510836
Target:  5'- cCGGCaGGGCCaCCGcCCccccGGCGGUCg -3'
miRNA:   3'- -GCCGcCCCGGgGGCuGGc---UUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 70451 0.67 0.510836
Target:  5'- uGGCGGuGGCgcuCCCCGAgacccCCGAgGCGGcCUu -3'
miRNA:   3'- gCCGCC-CCG---GGGGCU-----GGCU-UGCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 27336 0.67 0.510836
Target:  5'- uGGCGGGGaaCCgUGugCGGGCGGg-- -3'
miRNA:   3'- gCCGCCCCg-GGgGCugGCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 121257 0.67 0.509929
Target:  5'- gCGGCGGGggucccgcuguccGCCCUCGugCGcggccgccccGACGGUg- -3'
miRNA:   3'- -GCCGCCC-------------CGGGGGCugGC----------UUGCCAga -5'
5263 5' -64.6 NC_001798.1 + 150138 0.67 0.508118
Target:  5'- -cGCGGGGCCCgaguCCGACCcgcgccucuuccggGGGCGGg-- -3'
miRNA:   3'- gcCGCCCCGGG----GGCUGG--------------CUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 115735 0.67 0.501798
Target:  5'- cCGGCGGcGaagucCCCCCGGCCGGucCGGgggCa -3'
miRNA:   3'- -GCCGCC-Cc----GGGGGCUGGCUu-GCCa--Ga -5'
5263 5' -64.6 NC_001798.1 + 111589 0.67 0.501798
Target:  5'- uGaGCGGGGggCCCGGCgGGGCGGcCUc -3'
miRNA:   3'- gC-CGCCCCggGGGCUGgCUUGCCaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.